RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 SGK3Q96BR1 496 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 MED30Q96HR3 178 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 URM1Q9BTM9 101 aaKnown RBP8.95□□□□□ -0.98
LIG3-216ENST00000593099 EMC6Q9BV81 110 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 TMEM138Q9NPI0 162 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 INPP5EQ9NRR6 644 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 RBMXL2O75526 392 aaKnown RBP8.94□□□□□ -0.98
LIG3-216ENST00000593099 GATBO75879 557 aaKnown RBP8.94□□□□□ -0.98
LIG3-216ENST00000593099 HOXD11P31277 338 aaPredicted RBP8.94□□□□□ -0.98
LIG3-216ENST00000593099 UQCRC1P31930 480 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 SLC37A1P57057 533 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 SOX8P57073 446 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 LIN54Q6MZP7 749 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 PRSS48Q7RTY5 328 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 MDGA2Q7Z553 956 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 NEIL3Q8TAT5 605 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 ELP5Q8TE02 316 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 VSTM2LQ96N03 204 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 GPN1Q9HCN4 374 aaPredicted RBP8.94□□□□□ -0.98
LIG3-216ENST00000593099 GFOD1Q9NXC2 390 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 NOP16Q9Y3C1 178 aaKnown RBP8.94□□□□□ -0.98
LIG3-216ENST00000593099 TMEM269A0A1B0GVZ9 245 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 ZNF593O00488 134 aaPredicted RBP8.94□□□□□ -0.98
LIG3-216ENST00000593099 ABHD16AO95870 558 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 CD59P13987 128 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 MAP2K4P45985 399 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 ZNF117Q03924 483 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 MOGQ16653 247 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 TMEM211Q6ICI0 200 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 ARSKQ6UWY0 536 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 CHDHQ8NE62 594 aaPredicted RBP8.94□□□□□ -0.98
LIG3-216ENST00000593099 GPR148Q8TDV2 347 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 ACTR6Q9GZN1 396 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 ELOVL3Q9HB03 270 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 SIRT3Q9NTG7 399 aaPredicted RBP8.94□□□□□ -0.98
LIG3-216ENST00000593099 CCL27Q9Y4X3 112 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 CROCCQ5TZA2 2017 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 ALPLP05186 524 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 CFL1P23528 166 aaKnown RBP8.94□□□□□ -0.98
LIG3-216ENST00000593099 DAPP51397 102 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 OR7E24Q6IFN5 339 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 KCTD20Q7Z5Y7 419 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 ZFP41Q8N8Y5 198 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 BORCS8Q96FH0 119 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 ZC3HAV1LQ96H79 300 aaKnown RBP8.94□□□□□ -0.98
LIG3-216ENST00000593099 ZNF845Q96IR2 970 aaPredicted RBP8.94□□□□□ -0.98
LIG3-216ENST00000593099 COL4A6Q14031 1691 aa8.94□□□□□ -0.98
LIG3-216ENST00000593099 A0A1W2PPK0 400 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 DENRO43583 198 aaKnown RBP8.93□□□□□ -0.98
LIG3-216ENST00000593099 SNAPC5O75971 98 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 RLN1P04808 185 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 TGFBR2P37173 567 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 CBX5P45973 191 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 WNT4P56705 351 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 MADCAM1Q13477 382 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 NKPD1Q17RQ9 610 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 LRRN1Q6UXK5 716 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 NEDD4LQ96PU5 975 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 COL25A1Q9BXS0 654 aaPredicted RBP8.93□□□□□ -0.98
LIG3-216ENST00000593099 ANKRD60Q9BZ19 345 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 ZNF385DQ9H6B1 395 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 NIPAL2Q9H841 368 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 PAK1IP1Q9NWT1 392 aaPredicted RBP8.93□□□□□ -0.98
LIG3-216ENST00000593099 COPZ2Q9P299 210 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 HHLA2Q9UM44 414 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 LHX6Q9UPM6 363 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 FABP12A6NFH5 140 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 ZNF878C9JN71 531 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 CLEC3BP05452 202 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 TMEM225BP0DP42 221 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 ACKR1Q16570 336 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 TMEM52Q8NDY8 209 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 OR9K2Q8NGE7 335 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 MED18Q9BUE0 208 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 SCNM1Q9BWG6 230 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 TGIF2Q9GZN2 237 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 PSKH1P11801 424 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 FRKP42685 505 aaPredicted RBP8.93□□□□□ -0.98
LIG3-216ENST00000593099 MLF1P58340 268 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 KIF18BQ86Y91 864 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 ARIH2OSQ8N7S6 290 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 GJC3Q8NFK1 279 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 MFSD8Q8NHS3 518 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 ROBO4Q8WZ75 1007 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 RASD2Q96D21 266 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 POTEKPQ9BYX7 375 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 SLC6A13Q9NSD5 602 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 SVILO95425 2214 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 LIFP15018 202 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 MYBPHQ13203 477 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 ZNF141Q15928 474 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 C11orf91Q3C1V1 193 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 TMEM17Q86X19 198 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 CALHM3Q86XJ0 350 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 PPP1R35Q8TAP8 253 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 STOML3Q8TAV4 291 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 PHOX2BQ99453 314 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 PRO3102Q9H379 93 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 SCPEP1Q9HB40 452 aa8.93□□□□□ -0.98
LIG3-216ENST00000593099 OBP2BQ9NPH6 170 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms