RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	KCNK2	O95069	426 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	JCHAIN	P01591	159 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	NGFR	P08138	427 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	HBQ1	P09105	142 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	NPIPA8	P0DM63	369 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	IL7	P13232	177 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	CD1D	P15813	335 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	PAX1	P15863	534 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	GCA	P28676	217 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	HOXA6	P31267	233 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	ATP5C1	P36542	298 aa	Known RBP	4.1	□□□□□ -1.75
SS18-223	ENST00000583595	CDKN2A	P42771	156 aa	Known RBP	4.1	□□□□□ -1.75
SS18-223	ENST00000583595	HADHB	P55084	474 aa	Known RBP	4.1	□□□□□ -1.75
SS18-223	ENST00000583595	PAX9	P55771	341 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	CARD18	P57730	90 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	DEFA1	P59665	94 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	DEFA3	P59666	94 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	RPS15	P62841	145 aa	Known RBP	4.1	□□□□□ -1.75
SS18-223	ENST00000583595	RPL10A	P62906	217 aa	Known RBP	4.1	□□□□□ -1.75
SS18-223	ENST00000583595	IFITM3	Q01628	133 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	MESD	Q14696	234 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	LTB4R	Q15722	352 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	KNOP1	Q1ED39	458 aa	Known RBP	4.1	□□□□□ -1.75
SS18-223	ENST00000583595	MTHFSD	Q2M296	383 aa	Known RBP	4.1	□□□□□ -1.75
SS18-223	ENST00000583595	KLHL22	Q53GT1	634 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	PIP5KL1	Q5T9C9	394 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	AADACL4	Q5VUY2	407 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	RAET1L	Q5VY80	246 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	C9orf57	Q5W0N0	161 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	KIAA1161	Q6NSJ0	714 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	TSEN54	Q7Z6J9	526 aa	Known RBP	4.1	□□□□□ -1.75
SS18-223	ENST00000583595	TRIM69	Q86WT6	500 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	CRLF3	Q8IUI8	442 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	CPNE9	Q8IYJ1	553 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	KATNAL2	Q8IYT4	538 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF786	Q8N393	782 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	LIX1	Q8N485	282 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	4.1	□□□□□ -1.75
SS18-223	ENST00000583595	ZNRF1	Q8ND25	227 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	OR5AP2	Q8NGF4	316 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	OR5L2	Q8NGL0	311 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	OR6Q1	Q8NGQ2	317 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	OR1L6	Q8NGR2	347 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	PHOSPHO2	Q8TCD6	241 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	ZFAND1	Q8TCF1	268 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	MAPK15	Q8TD08	544 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	YIPF5	Q969M3	257 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	RAD51AP1	Q96B01	352 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF707	Q96C28	371 aa	Predicted RBP	4.1	□□□□□ -1.75
SS18-223	ENST00000583595	DCPS	Q96C86	337 aa	Known RBP	4.1	□□□□□ -1.75
SS18-223	ENST00000583595	BIRC7	Q96CA5	298 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	HAVCR1	Q96D42	359 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	CNRIP1	Q96F85	164 aa	Predicted RBP	4.1	□□□□□ -1.75
SS18-223	ENST00000583595	RNF170	Q96K19	258 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	C12orf42	Q96LP6	360 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	DUX5	Q96PT3	197 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	C12orf57	Q99622	126 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	PELO	Q9BRX2	385 aa	Known RBP	4.1	□□□□□ -1.75
SS18-223	ENST00000583595	CNPY3	Q9BT09	278 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	ST6GALNAC5	Q9BVH7	336 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	GEMIN7	Q9H840	131 aa	Known RBP	4.1	□□□□□ -1.75
SS18-223	ENST00000583595	WDR41	Q9HAD4	459 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	CYB5R1	Q9UHQ9	305 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	SPATA2	Q9UM82	520 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	NPIPA1	Q9UND3	350 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	ACOT9	Q9Y305	439 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	PLLP	Q9Y342	182 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	CBY1	Q9Y3M2	126 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	GMPPB	Q9Y5P6	360 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	LRP5	O75197	1615 aa		4.1	□□□□□ -1.75
SS18-223	ENST00000583595	NRAP	Q86VF7	1730 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	TRPM3	Q9HCF6	1732 aa	Predicted RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	SRCAP	Q6ZRS2	3230 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	TRBV5-4	A0A0C4DH59	114 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	PQLC2L	A1A4F0	135 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595		G3V4G9	280 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	SPOP	O43791	374 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	CALU	O43852	315 aa	Predicted RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	LDOC1	O95751	146 aa	Predicted RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	TGM6	O95932	706 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	CCNE2	O96020	404 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	CRYAA	P02489	173 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	GAPDH	P04406	335 aa	Known RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	SERPINB2	P05120	415 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	CRYGB	P07316	175 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	HOXD4	P09016	255 aa	Predicted RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	HSMCR30	P0CW71	290 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	ATP1B2	P14415	290 aa	Predicted RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	MYOG	P15173	224 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	TCN1	P20061	433 aa	Predicted RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	RPL4	P36578	427 aa	Known RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	CDKN1B	P46527	198 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	RPS5	P46782	204 aa	Known RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	THBS3	P49746	956 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	STK19	P49842	368 aa	Predicted RBP	4.09	□□□□□ -1.75
SS18-223	ENST00000583595	ERF	P50548	548 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	SLC7A2	P52569	658 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	CDH6	P55285	790 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	OR2B6	P58173	313 aa		4.09	□□□□□ -1.75
SS18-223	ENST00000583595	LINC01547	P58512	204 aa	Predicted RBP	4.09	□□□□□ -1.75

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