RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 DAP3P51398 398 aaKnown RBP16.88■□□□□ 0.29
SS18-208ENST00000577751 SMIM11AP58511 58 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 RUNX1T1Q06455 604 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 BNIP1Q12981 228 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 SEC23BQ15437 767 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 FGD3Q5JSP0 725 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 LRFN4Q6PJG9 635 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 ZDHHC21Q8IVQ6 265 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 ZNF611Q8N823 705 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 OR51A7Q8NH64 312 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 IGFBPL1Q8WX77 278 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 AKAP1Q92667 903 aaKnown RBP eCLIP16.88■□□□□ 0.29
SS18-208ENST00000577751 RADILQ96JH8 1075 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 ZNF347Q96SE7 839 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 CXXC4Q9H2H0 198 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 TXNIPQ9H3M7 391 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 MAGIXQ9H6Y5 334 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 CRNNQ9UBG3 495 aaPredicted RBP16.88■□□□□ 0.29
SS18-208ENST00000577751 MGAT4BQ9UQ53 548 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 TMEM5Q9Y2B1 443 aa16.88■□□□□ 0.29
SS18-208ENST00000577751 TRAV27A0A087WT01 109 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 SH3PXD2BA1X283 911 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 SHISA9B4DS77 424 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 ABCD4O14678 606 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 GYG2O15488 501 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 IGHG1P01857 330 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 IGHMP01871 453 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 ACADSP16219 412 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 MAGEA2P43356 314 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 UBE2NP61088 152 aaKnown RBP16.87■□□□□ 0.29
SS18-208ENST00000577751 TAF11Q15544 211 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 DEFB113Q30KQ7 82 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 ZNF672Q499Z4 452 aaPredicted RBP16.87■□□□□ 0.29
SS18-208ENST00000577751 DNAL1Q4LDG9 190 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 HDDC2Q7Z4H3 204 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 FAM169BQ8N8A8 192 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 KBTBD8Q8NFY9 601 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 OR4K5Q8NGD3 323 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 OR13C2Q8NGS9 318 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 OR52J3Q8NH60 311 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 NEUROG1Q92886 237 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 POP5Q969H6 163 aaKnown RBP16.87■□□□□ 0.29
SS18-208ENST00000577751 BTBD10Q9BSF8 475 aa16.87■□□□□ 0.29
SS18-208ENST00000577751 M0R1B8 84 aa16.86■□□□□ 0.29
SS18-208ENST00000577751 PTP4A3O75365 173 aa16.86■□□□□ 0.29
SS18-208ENST00000577751 TRMUO75648 421 aaKnown RBP16.86■□□□□ 0.29
SS18-208ENST00000577751 ZNF26P17031 533 aaPredicted RBP16.86■□□□□ 0.29
SS18-208ENST00000577751 RRM2P31350 389 aa16.86■□□□□ 0.29
SS18-208ENST00000577751 ZNF133P52736 654 aaPredicted RBP16.86■□□□□ 0.29
SS18-208ENST00000577751 HMGA2P52926 109 aa16.86■□□□□ 0.29
SS18-208ENST00000577751 ART1P52961 327 aa16.86■□□□□ 0.29
SS18-208ENST00000577751 SPIBQ01892 262 aa16.86■□□□□ 0.29
SS18-208ENST00000577751 TRAP1Q12931 704 aaKnown RBP16.86■□□□□ 0.29
SS18-208ENST00000577751 C3orf36Q3SXR2 165 aa16.86■□□□□ 0.29
SS18-208ENST00000577751 ZBED5Q49AG3 693 aa16.86■□□□□ 0.29
SS18-208ENST00000577751 CCDC36Q8IYA8 594 aa16.86■□□□□ 0.29
SS18-208ENST00000577751 PIGTQ969N2 578 aa16.86■□□□□ 0.29
SS18-208ENST00000577751 FAM46AQ96IP4 442 aaKnown RBP16.86■□□□□ 0.29
SS18-208ENST00000577751 ALPK1Q96QP1 1244 aa16.86■□□□□ 0.29
SS18-208ENST00000577751 FOXB1Q99853 325 aa16.86■□□□□ 0.29
SS18-208ENST00000577751 HEATR1Q9H583 2144 aaKnown RBP16.86■□□□□ 0.29
SS18-208ENST00000577751 MOV10Q9HCE1 1003 aaKnown RBP16.86■□□□□ 0.29
SS18-208ENST00000577751 STX18Q9P2W9 335 aaKnown RBP16.86■□□□□ 0.29
SS18-208ENST00000577751 ZNF346Q9UL40 294 aaKnown RBP16.86■□□□□ 0.29
SS18-208ENST00000577751 POFUT2Q9Y2G5 429 aa16.86■□□□□ 0.29
SS18-208ENST00000577751 ZNF503-AS2A6NEH8 195 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 MCIDASD6RGH6 385 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 SEC14L2O76054 403 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 IGKV3-15P01624 115 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 IGLV1-44P01699 117 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 QDPRP09417 244 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 CTXN1P60606 82 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 RPL27P61353 136 aaKnown RBP16.85■□□□□ 0.29
SS18-208ENST00000577751 TUBA1BP68363 451 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 TUBA4AP68366 448 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 ZNF813Q6ZN06 617 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 TUBA1AQ71U36 451 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 NOXO1Q8NFA2 376 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 FBXW5Q969U6 566 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 MCHR2Q969V1 340 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 CCDC124Q96CT7 223 aaKnown RBP16.85■□□□□ 0.29
SS18-208ENST00000577751 NMD3Q96D46 503 aaKnown RBP16.85■□□□□ 0.29
SS18-208ENST00000577751 KCNK17Q96T54 332 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 GPA33Q99795 319 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 KRCC1Q9NPI7 259 aaPredicted RBP16.85■□□□□ 0.29
SS18-208ENST00000577751 BEX4Q9NWD9 120 aaPredicted RBP16.85■□□□□ 0.29
SS18-208ENST00000577751 B3GNT2Q9NY97 397 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 SIGLEC7Q9Y286 467 aa16.85■□□□□ 0.29
SS18-208ENST00000577751 IGHV1-18A0A0C4DH31 117 aa16.84■□□□□ 0.29
SS18-208ENST00000577751 DHHO43323 396 aa16.84■□□□□ 0.29
SS18-208ENST00000577751 CBR1P16152 277 aa16.84■□□□□ 0.29
SS18-208ENST00000577751 CLRN1P58418 232 aa16.84■□□□□ 0.29
SS18-208ENST00000577751 SPOCK1Q08629 439 aa16.84■□□□□ 0.29
SS18-208ENST00000577751 SPNS3Q6ZMD2 512 aa16.84■□□□□ 0.29
SS18-208ENST00000577751 ZER1Q7Z7L7 766 aa16.84■□□□□ 0.29
SS18-208ENST00000577751 IGFN1Q86VF2 1251 aa16.84■□□□□ 0.29
SS18-208ENST00000577751 HDAC2Q92769 488 aaKnown RBP16.84■□□□□ 0.29
SS18-208ENST00000577751 SLC38A2Q96QD8 506 aa16.84■□□□□ 0.29
SS18-208ENST00000577751 CCL19Q99731 98 aa16.84■□□□□ 0.29
SS18-208ENST00000577751 CISD1Q9NZ45 108 aaKnown RBP16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms