RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 ZNF564Q8TBZ8 553 aaPredicted RBP3.67□□□□□ -1.82
NUP88-213ENST00000576862 ZNF596Q8TC21 504 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 ZNF707Q96C28 371 aaPredicted RBP3.67□□□□□ -1.82
NUP88-213ENST00000576862 DNAJA3Q96EY1 480 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 TMA16Q96EY4 203 aaKnown RBP3.67□□□□□ -1.82
NUP88-213ENST00000576862 C12orf42Q96LP6 360 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 SELENOSQ9BQE4 189 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 TMEM175Q9BSA9 504 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 HCAR1Q9BXC0 346 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 ANGPTL4Q9BY76 406 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 KRTAP4-4Q9BYR3 166 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 ANKRD60Q9BZ19 345 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 GEMIN7Q9H840 131 aaKnown RBP3.67□□□□□ -1.82
NUP88-213ENST00000576862 NTN4Q9HB63 628 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 PDFQ9HBH1 243 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 SLC38A10Q9HBR0 1119 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 SGK2Q9HBY8 427 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 DMAP1Q9NPF5 467 aaPredicted RBP3.67□□□□□ -1.82
NUP88-213ENST00000576862 MIEF1Q9NQG6 463 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 MRPL22Q9NWU5 206 aaKnown RBP3.67□□□□□ -1.82
NUP88-213ENST00000576862 RBAKQ9NYW8 714 aaPredicted RBP3.67□□□□□ -1.82
NUP88-213ENST00000576862 PDP1Q9P0J1 537 aaPredicted RBP3.67□□□□□ -1.82
NUP88-213ENST00000576862 IFNKQ9P0W0 207 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 RNF14Q9UBS8 474 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 PYCARDQ9ULZ3 195 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 IFT52Q9Y366 437 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 TIMM22Q9Y584 194 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 PUS1Q9Y606 427 aaKnown RBP eCLIP3.67□□□□□ -1.82
NUP88-213ENST00000576862 MYH2Q9UKX2 1941 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 ABCB11O95342 1321 aa3.67□□□□□ -1.82
NUP88-213ENST00000576862 GSTTP1A0A1W2PQM5 241 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 TMEM89A2RUT3 159 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 EPOPA6NHQ4 379 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 CENPBD1B2RD01 187 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 CFLARO15519 480 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 RNF13O43567 381 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 HCN1O60741 890 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 ERLIN2O94905 339 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 CCNB2O95067 398 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 CCNOP22674 350 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 IL32P24001 234 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 RGS4P49798 205 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 CDH4P55283 916 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 RAB14P61106 215 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 PSMC5P62195 406 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 RAB11AP62491 216 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 LRRC63Q05C16 580 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 CD47Q08722 323 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 ITGB3BPQ13352 177 aaPredicted RBP3.66□□□□□ -1.82
NUP88-213ENST00000576862 RAB11BQ15907 218 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 PAGE2BQ5JRK9 111 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 TMEM31Q5JXX7 168 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 EOGTQ5NDL2 527 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 LDLRAP1Q5SW96 308 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 ZNF658Q5TYW1 1059 aaPredicted RBP3.66□□□□□ -1.82
NUP88-213ENST00000576862 TTC23Q5W5X9 447 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 ZNF544Q6NX49 715 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 Q6ZPB1 254 aaPredicted RBP3.66□□□□□ -1.82
NUP88-213ENST00000576862 DCXRQ7Z4W1 244 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 AKAP14Q86UN6 197 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 VSTM4Q8IW00 320 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 GPR65Q8IYL9 337 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 MICU2Q8IYU8 434 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 GCNT2Q8N0V5 402 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 OR13C9Q8NGT0 318 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 NELFBQ8WX92 580 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 FCGR1BQ92637 280 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 TOP1MTQ969P6 601 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 MRGPRFQ96AM1 343 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 KIAA1143Q96AT1 154 aaPredicted RBP3.66□□□□□ -1.82
NUP88-213ENST00000576862 DCPSQ96C86 337 aaKnown RBP3.66□□□□□ -1.82
NUP88-213ENST00000576862 COQ2Q96H96 371 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 CBWD1Q9BRT8 395 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 TMEM43Q9BTV4 400 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 CHRDL1Q9BU40 450 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 BBS2Q9BXC9 721 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 SIRPDQ9H106 197 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 OR51V1Q9H2C8 321 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 FBXO44Q9H4M3 255 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 FAM124BQ9H5Z6 455 aaPredicted RBP3.66□□□□□ -1.82
NUP88-213ENST00000576862 RANBP3Q9H6Z4 567 aaPredicted RBP3.66□□□□□ -1.82
NUP88-213ENST00000576862 CSNK1G1Q9HCP0 422 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 PNO1Q9NRX1 252 aaKnown RBP3.66□□□□□ -1.82
NUP88-213ENST00000576862 PLSCR3Q9NRY6 295 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 SAMSN1Q9NSI8 373 aaKnown RBP3.66□□□□□ -1.82
NUP88-213ENST00000576862 RMND1Q9NWS8 449 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 EURLQ9NYK6 297 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 GCNT4Q9P109 453 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 SEC14L3Q9UDX4 400 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 TBC1D24Q9ULP9 559 aa3.66□□□□□ -1.82
NUP88-213ENST00000576862 PACSIN2Q9UNF0 486 aaPredicted RBP3.66□□□□□ -1.82
NUP88-213ENST00000576862 PRRC2AP48634 2157 aaKnown RBP3.66□□□□□ -1.82
NUP88-213ENST00000576862 A0A0U1RRA0 63 aa3.65□□□□□ -1.83
NUP88-213ENST00000576862 PVALEFA0A1B0GWK0 134 aa3.65□□□□□ -1.83
NUP88-213ENST00000576862 ANKRD30BLA7E2S9 258 aa3.65□□□□□ -1.83
NUP88-213ENST00000576862 C11orf98E9PRG8 122 aa3.65□□□□□ -1.83
NUP88-213ENST00000576862 HAS3O00219 553 aa3.65□□□□□ -1.83
NUP88-213ENST00000576862 RAD51BO15315 384 aa3.65□□□□□ -1.83
NUP88-213ENST00000576862 STK17BO94768 372 aa3.65□□□□□ -1.83
NUP88-213ENST00000576862 TOXO94900 526 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms