RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 HELTA6NFD8 242 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 CD8B2A6NJW9 211 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 A6NNC1 897 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 AGAP14A8MT82 685 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 E7EWF7 191 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 G3V3Q6 166 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 KLRC4-KLRK1H3BQV0 150 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 SGK494L7N484 410 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 SLC33A1O00400 549 aaPredicted RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 CXCR6O00574 342 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 UBFD1O14562 309 aaKnown RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 ANKRD28O15084 1053 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 TGFB1I1O43294 461 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 ZNF749O43361 778 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 KDELR3O43731 214 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 OR4F21O95013 312 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 SNAI1O95863 264 aaPredicted RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 TOMM40O96008 361 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 TGFAP01135 160 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 PCCBP05166 539 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 MMP2P08253 660 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 CSF3P09919 207 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 ALDOCP09972 364 aaKnown RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 H2AFZP0C0S5 128 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 UBBP0CG47 229 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 UBCP0CG48 685 aaKnown RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 CSH1P0DML2 217 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 CSH2P0DML3 217 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 SULT1A3P0DMM9 295 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 SULT1A4P0DMN0 295 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 THRBP10828 461 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 TDGF1P13385 188 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 GTF2F2P13984 249 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 FOLR1P15328 257 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 KCNE1P15382 129 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 GZMHP20718 246 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 ANOS1P23352 680 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 MPZP25189 248 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 CCND3P30281 292 aaPredicted RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 AVPR2P30518 371 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 PTGER4P35408 488 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 ARL3P36405 182 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 P2RY2P41231 377 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 TECP42680 631 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 MAGEA3P43357 314 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 IDH2P48735 452 aaKnown RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 PDLIM4P50479 330 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 TAS2R38P59533 333 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 OR2B8PP59922 312 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 RPS27AP62979 156 aaKnown RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 UBA52P62987 128 aaKnown RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 RAE1P78406 368 aaKnown RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 SSBP2P81877 361 aaPredicted RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 HSF1Q00613 529 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 RBPJQ06330 500 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 CACNG1Q06432 222 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 KHDRBS1Q07666 443 aaKnown RBP eCLIP2.94□□□□□ -1.94
VPS35-208ENST00000568612 ZNF616Q08AN1 781 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 SNTB2Q13425 540 aaKnown RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 PMS2P11Q13670 270 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 ABRAXAS2Q15018 415 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 RAB35Q15286 201 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 TRIP6Q15654 476 aaKnown RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 ZBTB6Q15916 424 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 KCTD19Q17RG1 926 aaPredicted RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 PYCR3Q53H96 274 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 ZNF667Q5HYK9 610 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 EEF1AKMT2Q5JPI9 291 aaKnown RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 SAMD4BQ5PRF9 694 aaKnown RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 AKR1C8PQ5T2L2 129 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 C9orf135Q5VTT2 229 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 IZUMO3Q5VZ72 239 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 TRIQKQ629K1 86 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 TANGO2Q6ICL3 276 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 OR4F3Q6IEY1 312 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 LCN8Q6JVE9 175 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 ZNF774Q6NX45 483 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 DNAJC24Q6P3W2 148 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 GGT6Q6P531 493 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 TMEM179Q6ZVK1 233 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 H2AFVQ71UI9 128 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 FAM220AQ7Z4H9 259 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 TMEM144Q7Z5S9 345 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 CUZD1Q86UP6 607 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 IFNEQ86WN2 208 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 VRK2Q86Y07 508 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 FUNDC1Q8IVP5 155 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 SERPINA12Q8IW75 414 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 ARHGAP12Q8IWW6 846 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 ADGRF3Q8IZF5 1079 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 FAM58AQ8N1B3 248 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 C17orf78Q8N4C9 275 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 FTMTQ8N4E7 242 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 OR2C3Q8N628 320 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 LINC01465Q8N7H1 131 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 C4orf32Q8N8J7 132 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 FBXO36Q8NEA4 188 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 FAM71CQ8NEG0 241 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 STEAP2Q8NFT2 490 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 RDM1Q8NG50 284 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms