RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, human

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-223	ENST00000566472	MSX1	P28360	303 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	EPHA8	P29322	1005 aa	Predicted RBP	5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	CRABP1	P29762	137 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	GRPR	P30550	384 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	HOXA6	P31267	233 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	GDNF	P39905	211 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	APOBEC1	P41238	236 aa	Known RBP	5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	ARRB1	P49407	418 aa	Predicted RBP	5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	CSNK1E	P49674	416 aa	Known RBP	5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	DAP3	P51398	398 aa	Known RBP	5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	EFNA3	P52797	238 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	CAPZA1	P52907	286 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	ART1	P52961	327 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	RNF4	P78317	190 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	DGCR2	P98153	550 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	SSBP1	Q04837	148 aa	Known RBP	5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	DMWD	Q09019	674 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	SLC17A1	Q14916	467 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	NR0B2	Q15466	257 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	TOMM34	Q15785	309 aa	Predicted RBP	5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	CCDC85B	Q15834	202 aa	Predicted RBP	5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	ACKR1	Q16570	336 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	VWA2	Q5GFL6	755 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	SLC25A53	Q5H9E4	307 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	BCL2L15	Q5TBC7	163 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	PWWP2B	Q6NUJ5	590 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	KCTD18	Q6PI47	426 aa	Predicted RBP	5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	ZNF782	Q6ZMW2	699 aa	Predicted RBP	5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	DNM1P46	Q6ZS02	220 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	ZNF767P	Q75MW2	155 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	KRT74	Q7RTS7	529 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	ANKRD37	Q7Z713	158 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	ADGRG3	Q86Y34	549 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	ZNF679	Q8IYX0	411 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	DND1	Q8IYX4	353 aa	Known RBP	5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	CMTM4	Q8IZR5	234 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	OR6V1	Q8N148	313 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	SIX5	Q8N196	739 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	SLC25A45	Q8N413	288 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	FAM109A	Q8N4B1	249 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	ZNF676	Q8N7Q3	588 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472		Q8N9G6	341 aa	Predicted RBP	5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	ADPRHL1	Q8NDY3	354 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	NFAM1	Q8NET5	270 aa	Predicted RBP	5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	OR4D9	Q8NGE8	314 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	OR5L2	Q8NGL0	311 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	MFSD8	Q8NHS3	518 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	STT3B	Q8TCJ2	826 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	RNF128	Q8TEB7	428 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	TTC9	Q92623	222 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	HGD	Q93099	445 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	MIB2	Q96AX9	1013 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	SLC25A38	Q96DW6	304 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	S100A16	Q96FQ6	103 aa	Known RBP	5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	ELF4	Q99607	663 aa	Predicted RBP	5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	CACNG6	Q9BXT2	260 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	POTEKP	Q9BYX7	375 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	RTN4R	Q9BZR6	473 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	FOXQ1	Q9C009	403 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	SYT4	Q9H2B2	425 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	OR51J1	Q9H342	316 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	PRO3102	Q9H379	93 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	RANBP3	Q9H6Z4	567 aa	Predicted RBP	5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	GALNT9	Q9HCQ5	603 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	SRA1	Q9HD15	236 aa	Known RBP	5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	FANCF	Q9NPI8	374 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	ANKRD10	Q9NXR5	420 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	FRRS1L	Q9P0K9	344 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	PISD	Q9UG56	409 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	OR5V1	Q9UGF6	321 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	STEAP1	Q9UHE8	339 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	ING4	Q9UNL4	249 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	FOXJ3	Q9UPW0	622 aa		5.65	□□□□□ -1.5
CLN3-223	ENST00000566472	F5	P12259	2224 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472		A0A0A6YYJ9	748 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	CCDC163	A0A0D9SF12	145 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472		A0A1B0GUH1	482 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	5.64	□□□□□ -1.51
CLN3-223	ENST00000566472		A0A1W2PPK0	400 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	ANKRD20A5P	A0PJZ0	165 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	SLC22A23	A1A5C7	686 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	TVP23A	A6NH52	213 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	ANXA2P2	A6NMY6	339 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	FAM171A2	A8MVW0	826 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	IDS	B3KWA1	339 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	FTCDNL1	E5RQL4	147 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472		H7C1C5	153 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472		K7ESF4	209 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	DCTN6	O00399	190 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	ZNF593	O00488	134 aa	Predicted RBP	5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	KHNYN	O15037	678 aa	Known RBP	5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	ALOX12B	O75342	701 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	RPP14	O95059	124 aa	Known RBP	5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	NUDT14	O95848	222 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	TGM6	O95932	706 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	HRG	P04196	525 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	ANXA2	P07355	339 aa	Known RBP	5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	HEXB	P07686	556 aa		5.64	□□□□□ -1.51
CLN3-223	ENST00000566472	SULT1A3	P0DMM9	295 aa		5.64	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms