RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 RCN3Q96D15 328 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 MS4A3Q96HJ5 214 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 TNFRSF13CQ96RJ3 184 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 ULBP2Q9BZM5 246 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 GID8Q9NWU2 228 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 GLTPQ9NZD2 209 aa12.86□□□□□ -0.35
CLN3-213ENST00000565047 SONP18583 2426 aaKnown RBP12.86□□□□□ -0.35
CLN3-213ENST00000565047 SERPINI2O75830 405 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 THRBP10828 461 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 B4GALT1P15291 398 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 CSNK1A1P48729 337 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 PPOXP50336 477 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 ZNF133P52736 654 aaPredicted RBP12.85□□□□□ -0.35
CLN3-213ENST00000565047 SELENOWP63302 87 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 GSG1Q2KHT4 349 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 TMEM249Q2WGJ8 235 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 CYBRD1Q53TN4 286 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 ZNF813Q6ZN06 617 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 PIWIL3Q7Z3Z3 882 aaKnown RBP12.85□□□□□ -0.35
CLN3-213ENST00000565047 SKA3Q8IX90 412 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 MICU2Q8IYU8 434 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 POU5F2Q8N7G0 328 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 OR2T12Q8NG77 320 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 OR6N1Q8NGY5 312 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 FAM168AQ92567 244 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 NMD3Q96D46 503 aaKnown RBP12.85□□□□□ -0.35
CLN3-213ENST00000565047 SLC25A44Q96H78 314 aaPredicted RBP12.85□□□□□ -0.35
CLN3-213ENST00000565047 DENND2DQ9H6A0 471 aaPredicted RBP12.85□□□□□ -0.35
CLN3-213ENST00000565047 B3GAT2Q9NPZ5 323 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 A4GNTQ9UNA3 340 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 POFUT2Q9Y2G5 429 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 CAPN7Q9Y6W3 813 aa12.85□□□□□ -0.35
CLN3-213ENST00000565047 FBN1P35555 2871 aaKnown RBP12.85□□□□□ -0.35
CLN3-213ENST00000565047 ELOVL7A1L3X0 281 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 RNF13O43567 381 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 TLX2O43763 284 aaPredicted RBP12.84□□□□□ -0.35
CLN3-213ENST00000565047 OR7A10O76100 309 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 SLC25A16P16260 332 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 FUT1P19526 365 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 NR4A1P22736 598 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 SNRPD2P62316 118 aaKnown RBP12.84□□□□□ -0.35
CLN3-213ENST00000565047 VLDLRP98155 873 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 PPP2R2BQ00005 443 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 RPL18Q07020 188 aaKnown RBP12.84□□□□□ -0.35
CLN3-213ENST00000565047 PIGFQ07326 219 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 NPRL3Q12980 569 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 FHL1Q13642 323 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 MELKQ14680 651 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 FXNQ16595 210 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 ARMC4Q5T2S8 1044 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 VHLLQ6RSH7 139 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 TSEN54Q7Z6J9 526 aaKnown RBP12.84□□□□□ -0.35
CLN3-213ENST00000565047 TREML1Q86YW5 311 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 ANKS4BQ8N8V4 417 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 TMEM239Q8WW34 195 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 ZNF566Q969W8 418 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 KCNS3Q9BQ31 491 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 MED4Q9NPJ6 270 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 MAN2C1Q9NTJ4 1040 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 SNX13Q9Y5W8 968 aa12.84□□□□□ -0.35
CLN3-213ENST00000565047 NME4O00746 187 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 FFAR1O14842 300 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 DHHO43323 396 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 OR6A2O95222 327 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 IFNA14P01570 189 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 CSF3P09919 207 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 PATE4P0C8F1 98 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 CD79AP11912 226 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 COX4I1P13073 169 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 NPR2P20594 1047 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 AQP2P41181 271 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 TAS2R41P59536 307 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 RAB1AP62820 205 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 DEF8Q6ZN54 512 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 HIPK1Q86Z02 1210 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 SLC22A24Q8N4F4 322 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 MOSPD2Q8NHP6 518 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 MYLK2Q9H1R3 596 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 TMEM38BQ9NVV0 291 aa12.83□□□□□ -0.36
CLN3-213ENST00000565047 NPIPB13A6NJU9 1138 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 NPIPB4C9JG80 1138 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 BLOC1S5-TXNDC5H3BN57 136 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 hCG_2039718K7EN88 272 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 TRMUO75648 421 aaKnown RBP12.82□□□□□ -0.36
CLN3-213ENST00000565047 PRSS23O95084 383 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 BCL10O95999 233 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 HIST1H2ABP04908 130 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 F13BP05160 661 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 QDPRP09417 244 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 IGHV4-31P0DP07 118 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 NR4A2P43354 598 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 CAPZA2P47755 286 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 GIPRP48546 466 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 EVX1P49640 407 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 LIPEQ05469 1076 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 DAG1Q14118 895 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 LAPTM4AQ15012 233 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 NRN1LQ496H8 165 aa12.82□□□□□ -0.36
CLN3-213ENST00000565047 LRRC23Q53EV4 343 aaPredicted RBP12.82□□□□□ -0.36
CLN3-213ENST00000565047 C6orf52Q5T4I8 152 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms