RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 RNF13O43567 381 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 NPPAP01160 153 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 VIMP08670 466 aaKnown RBP9.35□□□□□ -0.91
VPS39-208ENST00000564994 PATE4P0C8F1 98 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 IGHV4-31P0DP07 118 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 ZNF35P13682 527 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 NPR2P20594 1047 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 USF1P22415 310 aaPredicted RBP9.35□□□□□ -0.91
VPS39-208ENST00000564994 OR1E2P47887 323 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 PPOXP50336 477 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 PDLIM4P50479 330 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 UGT2B15P54855 530 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 GUCY1A3Q02108 690 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 SNTB2Q13425 540 aaKnown RBP9.35□□□□□ -0.91
VPS39-208ENST00000564994 PIN1Q13526 163 aaPredicted RBP9.35□□□□□ -0.91
VPS39-208ENST00000564994 KRT80Q6KB66 452 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 SPATA21Q7Z572 469 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 ZNF584Q8IVC4 421 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 SKA3Q8IX90 412 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 CDK20Q8IZL9 346 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 SVOPLQ8N434 492 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 IL17RDQ8NFM7 739 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 PFN4Q8NHR9 129 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 TMEM255BQ8WV15 326 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 RASSF5Q8WWW0 418 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 FOXN4Q96NZ1 517 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 SH3GL1Q99961 368 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 C20orf141Q9NUB4 165 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 GLTPQ9NZD2 209 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 ARMCX1Q9P291 453 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 GMPR2Q9P2T1 348 aaKnown RBP9.35□□□□□ -0.91
VPS39-208ENST00000564994 RIMS3Q9UJD0 308 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 FKBP7Q9Y680 259 aa9.35□□□□□ -0.91
VPS39-208ENST00000564994 IGHV4-61A0A0C4DH41 118 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 SH3PXD2BA1X283 911 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 FAM220BPB1ANY3 271 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 OR5F1O95221 314 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 MT-ND1P03886 318 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 PGA4P0DJD7 388 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 PGA3P0DJD8 388 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 UMPSP11172 480 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 ZNF16P17020 682 aaPredicted RBP9.34□□□□□ -0.91
VPS39-208ENST00000564994 FUT1P19526 365 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 FUT4P22083 530 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 NR4A1P22736 598 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 KDELR2P33947 212 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 NR4A2P43354 598 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 GIPRP48546 466 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 PTDSS1P48651 473 aaKnown RBP9.34□□□□□ -0.91
VPS39-208ENST00000564994 TAS2R41P59536 307 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 RAB1AP62820 205 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 LSM11P83369 360 aaKnown RBP eCLIP9.34□□□□□ -0.91
VPS39-208ENST00000564994 RUNX1T1Q06455 604 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 RPL18Q07020 188 aaKnown RBP9.34□□□□□ -0.91
VPS39-208ENST00000564994 DAG1Q14118 895 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 MAPRE2Q15555 327 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 HIST3H3Q16695 136 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 CYBRD1Q53TN4 286 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 ERICH5Q6P6B1 374 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 DEF8Q6ZN54 512 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 NANOGNBQ7Z5D8 188 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 ZNF566Q969W8 418 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 SLC25A44Q96H78 314 aaPredicted RBP9.34□□□□□ -0.91
VPS39-208ENST00000564994 CCDC134Q9H6E4 229 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 MRGBPQ9NV56 204 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 BAG5Q9UL15 447 aa9.34□□□□□ -0.91
VPS39-208ENST00000564994 LOC390937A0A1W2PQ73 354 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 BLOC1S5-TXNDC5H3BN57 136 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 NDUFS8O00217 210 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 DHHO43323 396 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 OR7A10O76100 309 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 UBL3O95164 117 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 HIST1H2ABP04908 130 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 F13BP05160 661 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 QDPRP09417 244 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 TSPAN19P0C672 248 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 AQP2P41181 271 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 RBM34P42696 430 aaKnown RBP9.33□□□□□ -0.92
VPS39-208ENST00000564994 GGTLC2Q14390 218 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 RAB39AQ14964 217 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 CARTPTQ16568 116 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 LRRC23Q53EV4 343 aaPredicted RBP9.33□□□□□ -0.92
VPS39-208ENST00000564994 HIST3H2AQ7L7L0 130 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 PIWIL3Q7Z3Z3 882 aaKnown RBP9.33□□□□□ -0.92
VPS39-208ENST00000564994 SLC22A24Q8N4F4 322 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 POU5F2Q8N7G0 328 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 PCYOX1LQ8NBM8 494 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 OR2T12Q8NG77 320 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 MOSPD2Q8NHP6 518 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 TMEM239Q8WW34 195 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 ASB10Q8WXI3 467 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 HIST1H2ACQ93077 130 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 RCN3Q96D15 328 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 SGTBQ96EQ0 304 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 ZNF347Q96SE7 839 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 SEPHS2Q99611 448 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 SH3GL3Q99963 347 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 PIMREGQ9BSJ6 248 aa9.33□□□□□ -0.92
VPS39-208ENST00000564994 MRPL13Q9BYD1 178 aaKnown RBP9.33□□□□□ -0.92
VPS39-208ENST00000564994 MRPL37Q9BZE1 423 aaKnown RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms