RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 BIDP55957 195 aa14.46□□□□□ -0.09
CLN3-211ENST00000564091 SNX32Q86XE0 403 aa14.46□□□□□ -0.09
CLN3-211ENST00000564091 ARMC8Q8IUR7 673 aa14.46□□□□□ -0.09
CLN3-211ENST00000564091 ZNF584Q8IVC4 421 aa14.46□□□□□ -0.09
CLN3-211ENST00000564091 TMEM186Q96B77 213 aa14.46□□□□□ -0.09
CLN3-211ENST00000564091 ZNF607Q96SK3 696 aa14.46□□□□□ -0.09
CLN3-211ENST00000564091 EBF4Q9BQW3 602 aa14.46□□□□□ -0.09
CLN3-211ENST00000564091 TMEM43Q9BTV4 400 aa14.46□□□□□ -0.09
CLN3-211ENST00000564091 SLC52A3Q9NQ40 469 aa14.46□□□□□ -0.09
CLN3-211ENST00000564091 TCF7L2Q9NQB0 619 aa14.46□□□□□ -0.09
CLN3-211ENST00000564091 ZNF275Q9NSD4 429 aaPredicted RBP14.46□□□□□ -0.09
CLN3-211ENST00000564091 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.46□□□□□ -0.09
CLN3-211ENST00000564091 TRBV5-3A0A0A0MS03 114 aa14.45□□□□□ -0.1
CLN3-211ENST00000564091 POLR3GO15318 223 aaPredicted RBP14.45□□□□□ -0.1
CLN3-211ENST00000564091 SERPINB7O75635 380 aa14.45□□□□□ -0.1
CLN3-211ENST00000564091 RGS9O75916 674 aaPredicted RBP14.45□□□□□ -0.1
CLN3-211ENST00000564091 MFN2O95140 757 aa14.45□□□□□ -0.1
CLN3-211ENST00000564091 PPIBP23284 216 aaKnown RBP14.45□□□□□ -0.1
CLN3-211ENST00000564091 MRPL19P49406 292 aaKnown RBP14.45□□□□□ -0.1
CLN3-211ENST00000564091 IDH3AP50213 366 aa14.45□□□□□ -0.1
CLN3-211ENST00000564091 TMEM33P57088 247 aa14.45□□□□□ -0.1
CLN3-211ENST00000564091 RPS23P62266 143 aaKnown RBP14.45□□□□□ -0.1
CLN3-211ENST00000564091 C12orf54Q6X4T0 127 aa14.45□□□□□ -0.1
CLN3-211ENST00000564091 THSD4Q6ZMP0 1018 aa14.45□□□□□ -0.1
CLN3-211ENST00000564091 RANBP3LQ86VV4 465 aaPredicted RBP14.45□□□□□ -0.1
CLN3-211ENST00000564091 PAQR4Q8N4S7 273 aaPredicted RBP14.45□□□□□ -0.1
CLN3-211ENST00000564091 OR5J2Q8NH18 312 aa14.45□□□□□ -0.1
CLN3-211ENST00000564091 TMEM54Q969K7 222 aa14.45□□□□□ -0.1
CLN3-211ENST00000564091 TLCD1Q96CP7 247 aa14.45□□□□□ -0.1
CLN3-211ENST00000564091 MCHR1Q99705 422 aa14.45□□□□□ -0.1
CLN3-211ENST00000564091 SH3GL3Q99963 347 aa14.45□□□□□ -0.1
CLN3-211ENST00000564091 DENND2DQ9H6A0 471 aaPredicted RBP14.45□□□□□ -0.1
CLN3-211ENST00000564091 TMEM38AQ9H6F2 299 aa14.45□□□□□ -0.1
CLN3-211ENST00000564091 GLTPQ9NZD2 209 aa14.45□□□□□ -0.1
CLN3-211ENST00000564091 CDC14BO60729 498 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 OR6A2O95222 327 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 CLPTM1O96005 669 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 SERPINA5P05154 406 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 MSMBP08118 114 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 FAM157BP0CG42 384 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 GAAP10253 952 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 CCL2P13500 99 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 GPX2P18283 190 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 LSP1P33241 339 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 MAGEB1P43366 347 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 RUNX1T1Q06455 604 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 LRFN4Q6PJG9 635 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 LINC00114Q6XXX2 140 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 SLC35D2Q76EJ3 337 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 PIWIL3Q7Z3Z3 882 aaKnown RBP14.44□□□□□ -0.1
CLN3-211ENST00000564091 SLC22A24Q8N4F4 322 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 HIPK4Q8NE63 616 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 LRRC37BQ96QE4 947 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 TSPAN32Q96QS1 320 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 OR51B6Q9H340 312 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 TMBIM4Q9HC24 238 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 SLCO1B3Q9NPD5 702 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 TAAR3PQ9P1P4 343 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 SLC7A8Q9UHI5 535 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 GRIP1Q9Y3R0 1128 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 GMEB1Q9Y692 573 aa14.44□□□□□ -0.1
CLN3-211ENST00000564091 CPSF4LA6NMK7 179 aaKnown RBP14.43□□□□□ -0.1
CLN3-211ENST00000564091 EVPLLA8MZ36 301 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 RP2O75695 350 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 CH25HO95992 272 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 MT-ATP6P00846 226 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 TFP02787 698 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 OPN1SWP03999 348 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 CFPP27918 469 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 LMO4P61968 165 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 MELKQ14680 651 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 NPTX1Q15818 432 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 ZNF74Q16587 644 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 DUSP7Q16829 419 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 NKPD1Q17RQ9 610 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 AGKQ53H12 422 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 SWT1Q5T5J6 900 aaKnown RBP14.43□□□□□ -0.1
CLN3-211ENST00000564091 REP15Q6BDI9 236 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 RGS7BPQ6MZT1 257 aaPredicted RBP14.43□□□□□ -0.1
CLN3-211ENST00000564091 FAHD2BQ6P2I3 314 aaPredicted RBP14.43□□□□□ -0.1
CLN3-211ENST00000564091 RBM45Q8IUH3 476 aaKnown RBP14.43□□□□□ -0.1
CLN3-211ENST00000564091 LRRC17Q8N6Y2 441 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 SLC30A7Q8NEW0 376 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 BHLHE22Q8NFJ8 381 aaPredicted RBP14.43□□□□□ -0.1
CLN3-211ENST00000564091 SEMA6DQ8NFY4 1073 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 OR6X1Q8NH79 312 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 FAHD2AQ96GK7 314 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 TMEM38BQ9NVV0 291 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 TAS2R5Q9NYW4 299 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 FBXL3Q9UKT7 428 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 ZNF346Q9UL40 294 aaKnown RBP14.43□□□□□ -0.1
CLN3-211ENST00000564091 TENM1Q9UKZ4 2725 aa14.43□□□□□ -0.1
CLN3-211ENST00000564091 M0QX08 132 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 KPNA4O00629 521 aaPredicted RBP14.42□□□□□ -0.1
CLN3-211ENST00000564091 LYPD3O95274 346 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 TGDSO95455 350 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 THY1P04216 161 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 OR8G3PP0DMU2 310 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 ERVS71-1P61550 626 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 MRPS11P82912 194 aaKnown RBP14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms