RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 FUT1P19526 365 aa14.61□□□□□ -0.07
CLK3-210ENST00000563112 NPR2P20594 1047 aa14.61□□□□□ -0.07
CLK3-210ENST00000563112 OR1E2P47887 323 aa14.61□□□□□ -0.07
CLK3-210ENST00000563112 HGFACQ04756 655 aa14.61□□□□□ -0.07
CLK3-210ENST00000563112 PIGFQ07326 219 aa14.61□□□□□ -0.07
CLK3-210ENST00000563112 KRTAP1-1Q07627 177 aa14.61□□□□□ -0.07
CLK3-210ENST00000563112 PIN1Q13526 163 aaPredicted RBP14.61□□□□□ -0.07
CLK3-210ENST00000563112 EFNB3Q15768 340 aa14.61□□□□□ -0.07
CLK3-210ENST00000563112 PIWIL3Q7Z3Z3 882 aaKnown RBP14.61□□□□□ -0.07
CLK3-210ENST00000563112 TMEM239Q8WW34 195 aa14.61□□□□□ -0.07
CLK3-210ENST00000563112 TMEM54Q969K7 222 aa14.61□□□□□ -0.07
CLK3-210ENST00000563112 SGTBQ96EQ0 304 aa14.61□□□□□ -0.07
CLK3-210ENST00000563112 TPD52L3Q96J77 140 aa14.61□□□□□ -0.07
CLK3-210ENST00000563112 ZNF442Q9H7R0 627 aa14.61□□□□□ -0.07
CLK3-210ENST00000563112 MEPEQ9NQ76 525 aaPredicted RBP14.61□□□□□ -0.07
CLK3-210ENST00000563112 B3GNT2Q9NY97 397 aa14.61□□□□□ -0.07
CLK3-210ENST00000563112 A0A1W2PRG6 482 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 ZNF503-AS2A6NEH8 195 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 MCIDASD6RGH6 385 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 CD5LO43866 347 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 SHOX2O60902 331 aaPredicted RBP14.6□□□□□ -0.07
CLK3-210ENST00000563112 OR7A10O76100 309 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 UBL3O95164 117 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 IGF2P01344 180 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 COX4I1P13073 169 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 LSP1P33241 339 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 THBS4P35443 961 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 UGT2B15P54855 530 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 RAB1AP62820 205 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 SELENOWP63302 87 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 DAG1Q14118 895 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 MELKQ14680 651 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 HDDC2Q7Z4H3 204 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 MYPOPQ86VE0 399 aaPredicted RBP14.6□□□□□ -0.07
CLK3-210ENST00000563112 NKAIN4Q8IVV8 208 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 WDFY1Q8IWB7 410 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 TMEM255BQ8WV15 326 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 HOPXQ9BPY8 73 aaPredicted RBP14.6□□□□□ -0.07
CLK3-210ENST00000563112 RAB1BQ9H0U4 201 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 PLK3Q9H4B4 646 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 YAE1D1Q9NRH1 226 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 MED31Q9Y3C7 131 aa14.6□□□□□ -0.07
CLK3-210ENST00000563112 GSTA4O15217 222 aa14.59□□□□□ -0.07
CLK3-210ENST00000563112 DHHO43323 396 aa14.59□□□□□ -0.07
CLK3-210ENST00000563112 FARS2O95363 451 aaKnown RBP14.59□□□□□ -0.07
CLK3-210ENST00000563112 IGHG1P01857 330 aa14.59□□□□□ -0.07
CLK3-210ENST00000563112 ERCC1P07992 297 aaPredicted RBP14.59□□□□□ -0.07
CLK3-210ENST00000563112 OR8G3PP0DMU2 310 aa14.59□□□□□ -0.07
CLK3-210ENST00000563112 PTDSS1P48651 473 aaKnown RBP14.59□□□□□ -0.07
CLK3-210ENST00000563112 PPOXP50336 477 aa14.59□□□□□ -0.07
CLK3-210ENST00000563112 PDLIM4P50479 330 aa14.59□□□□□ -0.07
CLK3-210ENST00000563112 CLRN1P58418 232 aa14.59□□□□□ -0.07
CLK3-210ENST00000563112 LOXL1Q08397 574 aaPredicted RBP14.59□□□□□ -0.07
CLK3-210ENST00000563112 ST3GAL3Q11203 375 aa14.59□□□□□ -0.07
CLK3-210ENST00000563112 SNTB2Q13425 540 aaKnown RBP14.59□□□□□ -0.07
CLK3-210ENST00000563112 SPATA21Q7Z572 469 aa14.59□□□□□ -0.07
CLK3-210ENST00000563112 PFN4Q8NHR9 129 aa14.59□□□□□ -0.07
CLK3-210ENST00000563112 C10orf105Q8TEF2 133 aa14.59□□□□□ -0.07
CLK3-210ENST00000563112 SORCS2Q96PQ0 1159 aa14.59□□□□□ -0.07
CLK3-210ENST00000563112 TNFRSF13CQ96RJ3 184 aa14.59□□□□□ -0.07
CLK3-210ENST00000563112 EFCAB1Q9HAE3 211 aa14.59□□□□□ -0.07
CLK3-210ENST00000563112 NOX3Q9HBY0 568 aa14.59□□□□□ -0.07
CLK3-210ENST00000563112 MYOZ1Q9NP98 299 aaPredicted RBP14.59□□□□□ -0.07
CLK3-210ENST00000563112 INIPQ9NRY2 104 aa14.59□□□□□ -0.07
CLK3-210ENST00000563112 CMTM6Q9NX76 183 aa14.59□□□□□ -0.07
CLK3-210ENST00000563112 STX18Q9P2W9 335 aaKnown RBP14.59□□□□□ -0.07
CLK3-210ENST00000563112 HTR3EA5X5Y0 456 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 hCG_2039718K7EN88 272 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 NDUFS8O00217 210 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 NDUFAB1O14561 156 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 ATP8B1O43520 1251 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 CRLF1O75462 422 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 LY6HO94772 140 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 F13BP05160 661 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 PGA4P0DJD7 388 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 PGA3P0DJD8 388 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 NR4A1P22736 598 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 GIPRP48546 466 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 DAP3P51398 398 aaKnown RBP14.58□□□□□ -0.08
CLK3-210ENST00000563112 ZNF84P51523 738 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 GALK2Q01415 458 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 LIPEQ05469 1076 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 RPL18Q07020 188 aaKnown RBP14.58□□□□□ -0.08
CLK3-210ENST00000563112 KRT80Q6KB66 452 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 SKA3Q8IX90 412 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 SLC15A3Q8IY34 581 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 SLC22A24Q8N4F4 322 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 LIPHQ8WWY8 451 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 PRRC1Q96M27 445 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 CMAHPQ9Y471 501 aa14.58□□□□□ -0.08
CLK3-210ENST00000563112 CENPBD1B2RD01 187 aa14.57□□□□□ -0.08
CLK3-210ENST00000563112 GPRIN2O60269 458 aa14.57□□□□□ -0.08
CLK3-210ENST00000563112 QDPRP09417 244 aa14.57□□□□□ -0.08
CLK3-210ENST00000563112 ZNF14P17017 642 aaPredicted RBP14.57□□□□□ -0.08
CLK3-210ENST00000563112 USF1P22415 310 aaPredicted RBP14.57□□□□□ -0.08
CLK3-210ENST00000563112 AQP2P41181 271 aa14.57□□□□□ -0.08
CLK3-210ENST00000563112 CARTPTQ16568 116 aa14.57□□□□□ -0.08
CLK3-210ENST00000563112 TMEM249Q2WGJ8 235 aa14.57□□□□□ -0.08
CLK3-210ENST00000563112 GKAP1Q5VSY0 366 aaPredicted RBP14.57□□□□□ -0.08
CLK3-210ENST00000563112 LRFN4Q6PJG9 635 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms