RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 OR10A6Q8NH74 314 aa16.37■□□□□ 0.21
VPS35-202ENST00000561713 FGFBP3Q8TAT2 258 aa16.37■□□□□ 0.21
VPS35-202ENST00000561713 ADAMTS16Q8TE57 1224 aa16.37■□□□□ 0.21
VPS35-202ENST00000561713 DOK1Q99704 481 aa16.37■□□□□ 0.21
VPS35-202ENST00000561713 FOXB1Q99853 325 aa16.37■□□□□ 0.21
VPS35-202ENST00000561713 KAT8Q9H7Z6 458 aaKnown RBP16.37■□□□□ 0.21
VPS35-202ENST00000561713 MOV10Q9HCE1 1003 aaKnown RBP16.37■□□□□ 0.21
VPS35-202ENST00000561713 FZR1Q9UM11 496 aa16.37■□□□□ 0.21
VPS35-202ENST00000561713 FMO6PO60774 539 aa16.36■□□□□ 0.21
VPS35-202ENST00000561713 EDF1O60869 148 aaKnown RBP16.36■□□□□ 0.21
VPS35-202ENST00000561713 STAMBPO95630 424 aa16.36■□□□□ 0.21
VPS35-202ENST00000561713 ADRA2AP08913 450 aa16.36■□□□□ 0.21
VPS35-202ENST00000561713 ZNF14P17017 642 aaPredicted RBP16.36■□□□□ 0.21
VPS35-202ENST00000561713 PAX7P23759 505 aa16.36■□□□□ 0.21
VPS35-202ENST00000561713 RBBP4Q09028 425 aa16.36■□□□□ 0.21
VPS35-202ENST00000561713 RABL3Q5HYI8 236 aa16.36■□□□□ 0.21
VPS35-202ENST00000561713 PXKQ7Z7A4 578 aa16.36■□□□□ 0.21
VPS35-202ENST00000561713 ZNF75AQ96N20 296 aa16.36■□□□□ 0.21
VPS35-202ENST00000561713 SYT3Q9BQG1 590 aa16.36■□□□□ 0.21
VPS35-202ENST00000561713 MRPL37Q9BZE1 423 aaKnown RBP16.36■□□□□ 0.21
VPS35-202ENST00000561713 RAB1BQ9H0U4 201 aa16.36■□□□□ 0.21
VPS35-202ENST00000561713 MEGF8Q7Z7M0 2845 aa16.36■□□□□ 0.21
VPS35-202ENST00000561713 FBP2O00757 339 aa16.35■□□□□ 0.21
VPS35-202ENST00000561713 WIPF1O43516 503 aa16.35■□□□□ 0.21
VPS35-202ENST00000561713 SHOX2O60902 331 aaPredicted RBP16.35■□□□□ 0.21
VPS35-202ENST00000561713 OR6A2O95222 327 aa16.35■□□□□ 0.21
VPS35-202ENST00000561713 MT-ATP6P00846 226 aa16.35■□□□□ 0.21
VPS35-202ENST00000561713 SRP14P37108 136 aaKnown RBP16.35■□□□□ 0.21
VPS35-202ENST00000561713 RAB39AQ14964 217 aa16.35■□□□□ 0.21
VPS35-202ENST00000561713 MAD2L1BPQ15013 274 aaPredicted RBP16.35■□□□□ 0.21
VPS35-202ENST00000561713 TRIP10Q15642 601 aa16.35■□□□□ 0.21
VPS35-202ENST00000561713 LINC00114Q6XXX2 140 aa16.35■□□□□ 0.21
VPS35-202ENST00000561713 SLC35D2Q76EJ3 337 aa16.35■□□□□ 0.21
VPS35-202ENST00000561713 MEX3DQ86XN8 651 aaKnown RBP16.35■□□□□ 0.21
VPS35-202ENST00000561713 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.35■□□□□ 0.21
VPS35-202ENST00000561713 SNX18Q96RF0 628 aa16.35■□□□□ 0.21
VPS35-202ENST00000561713 TMEM120AQ9BXJ8 343 aa16.35■□□□□ 0.21
VPS35-202ENST00000561713 PLA2G12AQ9BZM1 189 aa16.35■□□□□ 0.21
VPS35-202ENST00000561713 MYEF2Q9P2K5 600 aaKnown RBP16.35■□□□□ 0.21
VPS35-202ENST00000561713 TMEFF2Q9UIK5 374 aaPredicted RBP16.35■□□□□ 0.21
VPS35-202ENST00000561713 TRIM33Q9UPN9 1127 aa16.35■□□□□ 0.21
VPS35-202ENST00000561713 RNF13O43567 381 aa16.34■□□□□ 0.21
VPS35-202ENST00000561713 LILRA1O75019 489 aa16.34■□□□□ 0.21
VPS35-202ENST00000561713 RAB36O95755 333 aa16.34■□□□□ 0.21
VPS35-202ENST00000561713 UMPSP11172 480 aa16.34■□□□□ 0.21
VPS35-202ENST00000561713 TCN1P20061 433 aaPredicted RBP16.34■□□□□ 0.21
VPS35-202ENST00000561713 NR4A1P22736 598 aa16.34■□□□□ 0.21
VPS35-202ENST00000561713 GIFP27352 417 aa16.34■□□□□ 0.21
VPS35-202ENST00000561713 ALDH3B1P43353 468 aa16.34■□□□□ 0.21
VPS35-202ENST00000561713 GZMMP51124 257 aa16.34■□□□□ 0.21
VPS35-202ENST00000561713 TRMT5Q32P41 509 aaKnown RBP16.34■□□□□ 0.21
VPS35-202ENST00000561713 NANOGNBQ7Z5D8 188 aa16.34■□□□□ 0.21
VPS35-202ENST00000561713 PATL1Q86TB9 770 aaKnown RBP16.34■□□□□ 0.21
VPS35-202ENST00000561713 LRP11Q86VZ4 500 aa16.34■□□□□ 0.21
VPS35-202ENST00000561713 PFN4Q8NHR9 129 aa16.34■□□□□ 0.21
VPS35-202ENST00000561713 SLC26A7Q8TE54 656 aa16.34■□□□□ 0.21
VPS35-202ENST00000561713 STON2Q8WXE9 905 aa16.34■□□□□ 0.21
VPS35-202ENST00000561713 TMEM54Q969K7 222 aa16.34■□□□□ 0.21
VPS35-202ENST00000561713 LRR1Q96L50 414 aa16.34■□□□□ 0.21
VPS35-202ENST00000561713 OR51B6Q9H340 312 aa16.34■□□□□ 0.21
VPS35-202ENST00000561713 CMAHPQ9Y471 501 aa16.34■□□□□ 0.21
VPS35-202ENST00000561713 TRAPPC13A5PLN9 417 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 FXYD1O00168 92 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 SASH3O75995 380 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 TACSTD2P09758 323 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 APEX1P27695 318 aaKnown RBP16.33■□□□□ 0.2
VPS35-202ENST00000561713 CFPP27918 469 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 CHN2P52757 468 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 CCNIQ14094 377 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 VMACQ2NL98 169 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 TTC33Q6PID6 262 aaPredicted RBP16.33■□□□□ 0.2
VPS35-202ENST00000561713 DEF8Q6ZN54 512 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 ZNF627Q7L945 461 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 HDXQ7Z353 690 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 CARM1Q86X55 608 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 ZNF584Q8IVC4 421 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 SKA3Q8IX90 412 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 CCDC36Q8IYA8 594 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 LINC01356Q8N9X3 169 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 MRPL24Q96A35 216 aaKnown RBP16.33■□□□□ 0.2
VPS35-202ENST00000561713 SH3GL3Q99963 347 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 PRSS27Q9BQR3 290 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 EVA1AQ9H8M9 152 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 NANSQ9NR45 359 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 TAS2R5Q9NYW4 299 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 GLTPQ9NZD2 209 aa16.33■□□□□ 0.2
VPS35-202ENST00000561713 CCL2P13500 99 aa16.32■□□□□ 0.2
VPS35-202ENST00000561713 ZNF35P13682 527 aa16.32■□□□□ 0.2
VPS35-202ENST00000561713 SEC24CP53992 1094 aa16.32■□□□□ 0.2
VPS35-202ENST00000561713 UGT2B15P54855 530 aa16.32■□□□□ 0.2
VPS35-202ENST00000561713 RAB1AP62820 205 aa16.32■□□□□ 0.2
VPS35-202ENST00000561713 MYBPC1Q00872 1141 aa16.32■□□□□ 0.2
VPS35-202ENST00000561713 ALKBH6Q3KRA9 238 aa16.32■□□□□ 0.2
VPS35-202ENST00000561713 C12orf54Q6X4T0 127 aa16.32■□□□□ 0.2
VPS35-202ENST00000561713 PAQR4Q8N4S7 273 aaPredicted RBP16.32■□□□□ 0.2
VPS35-202ENST00000561713 OR6X1Q8NH79 312 aa16.32■□□□□ 0.2
VPS35-202ENST00000561713 NEU4Q8WWR8 484 aaPredicted RBP16.32■□□□□ 0.2
VPS35-202ENST00000561713 HPS1Q92902 700 aa16.32■□□□□ 0.2
VPS35-202ENST00000561713 ZNF426Q9BUY5 554 aa16.32■□□□□ 0.2
VPS35-202ENST00000561713 NARFLQ9H6Q4 476 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms