RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 CARM1Q86X55 608 aa8.9□□□□□ -0.98
CLK3-205ENST00000561673 SNX32Q86XE0 403 aa8.9□□□□□ -0.98
CLK3-205ENST00000561673 HIPK1Q86Z02 1210 aa8.9□□□□□ -0.98
CLK3-205ENST00000561673 ZCCHC24Q8N2G6 241 aaKnown RBP8.9□□□□□ -0.98
CLK3-205ENST00000561673 C10orf82Q8WW14 230 aa8.9□□□□□ -0.98
CLK3-205ENST00000561673 HIST1H2ACQ93077 130 aa8.9□□□□□ -0.98
CLK3-205ENST00000561673 TMEM54Q969K7 222 aa8.9□□□□□ -0.98
CLK3-205ENST00000561673 DOK1Q99704 481 aa8.9□□□□□ -0.98
CLK3-205ENST00000561673 FOXB1Q99853 325 aa8.9□□□□□ -0.98
CLK3-205ENST00000561673 ZNF442Q9H7R0 627 aa8.9□□□□□ -0.98
CLK3-205ENST00000561673 GLTPQ9NZD2 209 aa8.9□□□□□ -0.98
CLK3-205ENST00000561673 FKBP7Q9Y680 259 aa8.9□□□□□ -0.98
CLK3-205ENST00000561673 CR1P17927 2039 aa8.9□□□□□ -0.99
CLK3-205ENST00000561673 SONP18583 2426 aaKnown RBP8.9□□□□□ -0.99
CLK3-205ENST00000561673 VSTM5A8MXK1 200 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 VWC2LB2RUY7 222 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 BLOC1S5-TXNDC5H3BN57 136 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 PATE4P0C8F1 98 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 UMPSP11172 480 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 ZNF35P13682 527 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 ZNF14P17017 642 aaPredicted RBP8.89□□□□□ -0.99
CLK3-205ENST00000561673 USF1P22415 310 aaPredicted RBP8.89□□□□□ -0.99
CLK3-205ENST00000561673 NR4A1P22736 598 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 OR1E2P47887 323 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 PTDSS1P48651 473 aaKnown RBP8.89□□□□□ -0.99
CLK3-205ENST00000561673 PPOXP50336 477 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 PDLIM4P50479 330 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 TAS2R41P59536 307 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 RAB1AP62820 205 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 GUCY1A3Q02108 690 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 PIN1Q13526 163 aaPredicted RBP8.89□□□□□ -0.99
CLK3-205ENST00000561673 MELKQ14680 651 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 MAPRE2Q15555 327 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 CARTPTQ16568 116 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 C6orf52Q5T4I8 152 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 LCE2DQ5TA82 110 aaPredicted RBP8.89□□□□□ -0.99
CLK3-205ENST00000561673 PIWIL3Q7Z3Z3 882 aaKnown RBP8.89□□□□□ -0.99
CLK3-205ENST00000561673 SPATA21Q7Z572 469 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 NKAIN4Q8IVV8 208 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 SKA3Q8IX90 412 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 SVOPLQ8N434 492 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 PCYOX1LQ8NBM8 494 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 PFN4Q8NHR9 129 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 FGFBP3Q8TAT2 258 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 TMEM255BQ8WV15 326 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 ZNF566Q969W8 418 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 SLC25A44Q96H78 314 aaPredicted RBP8.89□□□□□ -0.99
CLK3-205ENST00000561673 FOXN4Q96NZ1 517 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 GID8Q9NWU2 228 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 RIMS3Q9UJD0 308 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 BAG5Q9UL15 447 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 ABCA1O95477 2261 aa8.89□□□□□ -0.99
CLK3-205ENST00000561673 MXRA5Q9NR99 2828 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 LOC390937A0A1W2PQ73 354 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 SH3PXD2BA1X283 911 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 NDUFS8O00217 210 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 OR5F1O95221 314 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 BCL10O95999 233 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 IFNA14P01570 189 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 MT-ND1P03886 318 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 IGFBP1P08833 259 aaPredicted RBP8.88□□□□□ -0.99
CLK3-205ENST00000561673 QDPRP09417 244 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 PGA4P0DJD7 388 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 PGA3P0DJD8 388 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 IGHV4-31P0DP07 118 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 FUT1P19526 365 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 KDELR2P33947 212 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 RBM34P42696 430 aaKnown RBP8.88□□□□□ -0.99
CLK3-205ENST00000561673 NR4A2P43354 598 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 GIPRP48546 466 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 UGT2B15P54855 530 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 RUNX1T1Q06455 604 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 SNTB2Q13425 540 aaKnown RBP8.88□□□□□ -0.99
CLK3-205ENST00000561673 MSMPQ1L6U9 139 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 CYBRD1Q53TN4 286 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 CYB5R2Q6BCY4 276 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 ERICH5Q6P6B1 374 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 DEF8Q6ZN54 512 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 CDK20Q8IZL9 346 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 SLC22A24Q8N4F4 322 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 TMEM239Q8WW34 195 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 SH3GL3Q99963 347 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 OCSTAMPQ9BR26 566 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 PIMREGQ9BSJ6 248 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 POLR2J2Q9GZM3 115 aaKnown RBP8.88□□□□□ -0.99
CLK3-205ENST00000561673 RAB1BQ9H0U4 201 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 POLR2J3Q9H1A7 115 aaKnown RBP8.88□□□□□ -0.99
CLK3-205ENST00000561673 DENND2DQ9H6A0 471 aaPredicted RBP8.88□□□□□ -0.99
CLK3-205ENST00000561673 CCDC134Q9H6E4 229 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 C20orf141Q9NUB4 165 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 ARMCX1Q9P291 453 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 FBXO9Q9UK97 447 aaPredicted RBP8.88□□□□□ -0.99
CLK3-205ENST00000561673 CMAHPQ9Y471 501 aa8.88□□□□□ -0.99
CLK3-205ENST00000561673 IGHV4-61A0A0C4DH41 118 aa8.87□□□□□ -0.99
CLK3-205ENST00000561673 A0A1W2PRG6 482 aa8.87□□□□□ -0.99
CLK3-205ENST00000561673 FAM220BPB1ANY3 271 aa8.87□□□□□ -0.99
CLK3-205ENST00000561673 DHHO43323 396 aa8.87□□□□□ -0.99
CLK3-205ENST00000561673 OR7A10O76100 309 aa8.87□□□□□ -0.99
CLK3-205ENST00000561673 UBL3O95164 117 aa8.87□□□□□ -0.99
CLK3-205ENST00000561673 RAB36O95755 333 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms