RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 SLC6A6P31641 620 aa19.16■□□□□ 0.66
SNX1-210ENST00000560260 ACVR1BP36896 505 aa19.16■□□□□ 0.66
SNX1-210ENST00000560260 CSNK1A1P48729 337 aa19.16■□□□□ 0.66
SNX1-210ENST00000560260 ELF3P78545 371 aaPredicted RBP19.16■□□□□ 0.66
SNX1-210ENST00000560260 ROR2Q01974 943 aaKnown RBP19.16■□□□□ 0.66
SNX1-210ENST00000560260 CLEC12AQ5QGZ9 265 aa19.16■□□□□ 0.66
SNX1-210ENST00000560260 GPR137CQ8N3F9 429 aa19.16■□□□□ 0.66
SNX1-210ENST00000560260 ARIH2OSQ8N7S6 290 aa19.16■□□□□ 0.66
SNX1-210ENST00000560260 OR6N1Q8NGY5 312 aa19.16■□□□□ 0.66
SNX1-210ENST00000560260 STMN2Q93045 179 aa19.16■□□□□ 0.66
SNX1-210ENST00000560260 ZNF566Q969W8 418 aa19.16■□□□□ 0.66
SNX1-210ENST00000560260 ZNF570Q96NI8 536 aa19.16■□□□□ 0.66
SNX1-210ENST00000560260 KCNK17Q96T54 332 aa19.16■□□□□ 0.66
SNX1-210ENST00000560260 GPR35Q9HC97 309 aa19.16■□□□□ 0.66
SNX1-210ENST00000560260 IGKV1D-43A0A0B4J1Z2 117 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 OR6C65A6NJZ3 312 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 ZNF587BE7ETH6 402 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 C16orf97H3BN30 126 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 H7C1C5 153 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 IMPA2O14732 288 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 MITFO75030 526 aaPredicted RBP19.15■□□□□ 0.66
SNX1-210ENST00000560260 TXNDC12O95881 172 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 IGHG1P01857 330 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 MPGP29372 298 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 SDHAP31040 664 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 ARHGDIAP52565 204 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 LCN6P62502 163 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 MYBPC1Q00872 1141 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 ITGADQ13349 1161 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 KRR1Q13601 381 aaKnown RBP19.15■□□□□ 0.66
SNX1-210ENST00000560260 P2RY6Q15077 328 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 HIST3H3Q16695 136 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 SLC36A3Q495N2 470 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 LRFN4Q6PJG9 635 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 DMRTC2Q8IXT2 367 aaPredicted RBP19.15■□□□□ 0.66
SNX1-210ENST00000560260 SVOPLQ8N434 492 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 SYT14Q8NB59 555 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 OR4Q3Q8NH05 313 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 MAGEE2Q8TD90 523 aaPredicted RBP19.15■□□□□ 0.66
SNX1-210ENST00000560260 LRRC46Q96FV0 321 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 NDEL1Q9GZM8 345 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 TBC1D23Q9NUY8 699 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 TAS2R16Q9NYV7 291 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 GLTPQ9NZD2 209 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 BAHCC1Q9P281 2608 aa19.15■□□□□ 0.66
SNX1-210ENST00000560260 RPL36A-HNRNPH2H7BZ11 118 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 BHLHE40O14503 412 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 RAD51DO75771 328 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 KRT33AO76009 404 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 APEHP13798 732 aaKnown RBP19.14■□□□□ 0.65
SNX1-210ENST00000560260 FMODQ06828 376 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 COX10Q12887 443 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 CEACAM16Q2WEN9 425 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 MEX3BQ6ZN04 569 aaKnown RBP19.14■□□□□ 0.65
SNX1-210ENST00000560260 PTCHD4Q6ZW05 846 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 BHLHA15Q7RTS1 189 aaPredicted RBP19.14■□□□□ 0.65
SNX1-210ENST00000560260 ZDHHC13Q8IUH4 622 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 LINC01560Q8TB33 94 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 KISS1RQ969F8 398 aaPredicted RBP19.14■□□□□ 0.65
SNX1-210ENST00000560260 S100PBPQ96BU1 408 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 ERMAPQ96PL5 475 aaPredicted RBP19.14■□□□□ 0.65
SNX1-210ENST00000560260 IFT27Q9BW83 186 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 TSSK6Q9BXA6 273 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 ULBP2Q9BZM5 246 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 ACTR6Q9GZN1 396 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 NELFAQ9H3P2 528 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 CRLF2Q9HC73 371 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 KIF17Q9P2E2 1029 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 GRHPRQ9UBQ7 328 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 TMEFF2Q9UIK5 374 aaPredicted RBP19.14■□□□□ 0.65
SNX1-210ENST00000560260 GPR52Q9Y2T5 361 aa19.14■□□□□ 0.65
SNX1-210ENST00000560260 CENPBD1B2RD01 187 aa19.13■□□□□ 0.65
SNX1-210ENST00000560260 SOCS2O14508 198 aa19.13■□□□□ 0.65
SNX1-210ENST00000560260 ARPC3O15145 178 aa19.13■□□□□ 0.65
SNX1-210ENST00000560260 RPS6KA3P51812 740 aa19.13■□□□□ 0.65
SNX1-210ENST00000560260 CLRN1P58418 232 aa19.13■□□□□ 0.65
SNX1-210ENST00000560260 PPP2R2BQ00005 443 aa19.13■□□□□ 0.65
SNX1-210ENST00000560260 RCN1Q15293 331 aa19.13■□□□□ 0.65
SNX1-210ENST00000560260 GABRA6Q16445 453 aa19.13■□□□□ 0.65
SNX1-210ENST00000560260 FAM205BPQ63HN1 556 aa19.13■□□□□ 0.65
SNX1-210ENST00000560260 RPL13AP3Q6NVV1 102 aa19.13■□□□□ 0.65
SNX1-210ENST00000560260 ZNF771Q7L3S4 317 aaPredicted RBP19.13■□□□□ 0.65
SNX1-210ENST00000560260 HDDC2Q7Z4H3 204 aa19.13■□□□□ 0.65
SNX1-210ENST00000560260 IQCF1Q8N6M8 205 aa19.13■□□□□ 0.65
SNX1-210ENST00000560260 CIB1Q99828 191 aa19.13■□□□□ 0.65
SNX1-210ENST00000560260 ALG12Q9BV10 488 aa19.13■□□□□ 0.65
SNX1-210ENST00000560260 A6NIZ1 184 aa19.12■□□□□ 0.65
SNX1-210ENST00000560260 ARHGEF9O43307 516 aa19.12■□□□□ 0.65
SNX1-210ENST00000560260 SEC14L2O76054 403 aa19.12■□□□□ 0.65
SNX1-210ENST00000560260 SLC2A10O95528 541 aa19.12■□□□□ 0.65
SNX1-210ENST00000560260 BAG2O95816 211 aa19.12■□□□□ 0.65
SNX1-210ENST00000560260 THBDP07204 575 aa19.12■□□□□ 0.65
SNX1-210ENST00000560260 OSMP13725 252 aa19.12■□□□□ 0.65
SNX1-210ENST00000560260 CDH2P19022 906 aaPredicted RBP19.12■□□□□ 0.65
SNX1-210ENST00000560260 IL32P24001 234 aa19.12■□□□□ 0.65
SNX1-210ENST00000560260 ZNF133P52736 654 aaPredicted RBP19.12■□□□□ 0.65
SNX1-210ENST00000560260 RAP1BP61224 184 aa19.12■□□□□ 0.65
SNX1-210ENST00000560260 RAP1AP62834 184 aa19.12■□□□□ 0.65
SNX1-210ENST00000560260 DBPQ10586 325 aaPredicted RBP19.12■□□□□ 0.65
SNX1-210ENST00000560260 KDM4DQ6B0I6 523 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms