RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 GPR107Q5VW38 600 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 NHLRC1Q6VVB1 395 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 ASB18Q6ZVZ8 466 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 SLC35D2Q76EJ3 337 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 MEPCEQ7L2J0 689 aaKnown RBP10.03□□□□□ -0.8
USP3-218ENST00000560202 UEVLDQ8IX04 471 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 SPARTQ8N0X7 666 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 GHDCQ8N2G8 530 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 STX19Q8N4C7 294 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 OR9Q1Q8NGQ5 310 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 OR10D3Q8NH80 312 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 NEIL3Q8TAT5 605 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 ZNF519Q8TB69 540 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 ZPLD1Q8TCW7 415 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 ZHX1-C8orf76Q96EF9 292 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 RNFT2Q96EX2 444 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 OXGR1Q96P68 337 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 OR51V1Q9H2C8 321 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 EXO5Q9H790 373 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 NPIPA1Q9UND3 350 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 RASD1Q9Y272 281 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 NOX1Q9Y5S8 564 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 SNX5Q9Y5X3 404 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 MPDZO75970 2070 aa10.03□□□□□ -0.8
USP3-218ENST00000560202 IGHV3-15A0A0B4J1V0 119 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 ARHGEF9O43307 516 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 VAMP5O95183 116 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 STSP08842 583 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 CLUP10909 449 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 ENPP1P22413 925 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 SLC2A5P22732 501 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 DBPQ10586 325 aaPredicted RBP10.02□□□□□ -0.8
USP3-218ENST00000560202 C1DQ13901 141 aaKnown RBP10.02□□□□□ -0.8
USP3-218ENST00000560202 VASNQ6EMK4 673 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 PRSS48Q7RTY5 328 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 ADCK1Q86TW2 530 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 GPAT4Q86UL3 456 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 MEIOBQ8N635 442 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 ASB10Q8WXI3 467 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 ZCCHC14Q8WYQ9 949 aaKnown RBP10.02□□□□□ -0.8
USP3-218ENST00000560202 TXNDC15Q96J42 360 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 SIGLEC11Q96RL6 698 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 UCN2Q96RP3 112 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 NMNAT2Q9BZQ4 307 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 TIGARQ9NQ88 270 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 MRPS18AQ9NVS2 196 aaKnown RBP10.02□□□□□ -0.8
USP3-218ENST00000560202 DAPK2Q9UIK4 370 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 TP53TG5Q9Y2B4 290 aa10.02□□□□□ -0.8
USP3-218ENST00000560202 URB1O60287 2271 aaKnown RBP10.02□□□□□ -0.81
USP3-218ENST00000560202 ACACAQ13085 2346 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 A6NIZ1 184 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 SLC22A31A6NKX4 558 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 CENPBD1B2RD01 187 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 H7C1C5 153 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 SMAD9O15198 467 aaKnown RBP10.02□□□□□ -0.81
USP3-218ENST00000560202 RENP00797 406 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 IGHG3P01860 377 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 MT-ND2P03891 347 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 GYPBP06028 91 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 ZNF43P17038 809 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 C21orf33P30042 268 aaPredicted RBP10.02□□□□□ -0.81
USP3-218ENST00000560202 SLC25A1P53007 311 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 SLC16A1P53985 500 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 ARPC4P59998 168 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 RAP1BP61224 184 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 RPS7P62081 194 aaKnown RBP10.02□□□□□ -0.81
USP3-218ENST00000560202 LCN6P62502 163 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 RAP1AP62834 184 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 MVKQ03426 396 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 SRYQ05066 204 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 RAB40BQ12829 278 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 PLEKHN1Q494U1 663 aaPredicted RBP10.02□□□□□ -0.81
USP3-218ENST00000560202 KLHL22Q53GT1 634 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 FAM205BPQ63HN1 556 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 RPUSD3Q6P087 351 aaKnown RBP10.02□□□□□ -0.81
USP3-218ENST00000560202 KCTD8Q6ZWB6 473 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 CPNE4Q96A23 557 aaPredicted RBP10.02□□□□□ -0.81
USP3-218ENST00000560202 LGALS12Q96DT0 336 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 SNX18Q96RF0 628 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 TAAR6Q96RI8 345 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 TEAD3Q99594 435 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 TIMP4Q99727 224 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 TSPAN10Q9H1Z9 355 aaPredicted RBP10.02□□□□□ -0.81
USP3-218ENST00000560202 RPRD1BQ9NQG5 326 aaKnown RBP10.02□□□□□ -0.81
USP3-218ENST00000560202 ASB6Q9NWX5 421 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 MED29Q9NX70 200 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 KLHL13Q9P2N7 655 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 SPRR3Q9UBC9 169 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 WARS2Q9UGM6 360 aaKnown RBP10.02□□□□□ -0.81
USP3-218ENST00000560202 LHX6Q9UPM6 363 aa10.02□□□□□ -0.81
USP3-218ENST00000560202 IRGMA1A4Y4 181 aa10.01□□□□□ -0.81
USP3-218ENST00000560202 ISPDA4D126 451 aa10.01□□□□□ -0.81
USP3-218ENST00000560202 PRSS37A4D1T9 235 aa10.01□□□□□ -0.81
USP3-218ENST00000560202 CCDC182A6NF36 153 aa10.01□□□□□ -0.81
USP3-218ENST00000560202 RGS13O14921 159 aa10.01□□□□□ -0.81
USP3-218ENST00000560202 TRAF3IP2O43734 574 aaPredicted RBP10.01□□□□□ -0.81
USP3-218ENST00000560202 SPI1P17947 270 aa10.01□□□□□ -0.81
USP3-218ENST00000560202 SERPINB10P48595 397 aa10.01□□□□□ -0.81
USP3-218ENST00000560202 BIDP55957 195 aa10.01□□□□□ -0.81
USP3-218ENST00000560202 RUNX1T1Q06455 604 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms