RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 LRRC75AQ8NAA5 344 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 TMEM54Q969K7 222 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 TXNIPQ9H3M7 391 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 REEP1Q9H902 201 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 GLTPQ9NZD2 209 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 AMDHD2Q9Y303 409 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 SAMHD1Q9Y3Z3 626 aaKnown RBP11.92□□□□□ -0.5
SHMT2-228ENST00000557302 SLC25A15Q9Y619 301 aa11.92□□□□□ -0.5
SHMT2-228ENST00000557302 OTOGQ6ZRI0 2925 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 PRR14LQ5THK1 2151 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 A0A1W2PR80 420 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 ZNF99A8MXY4 864 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-228ENST00000557302 PTP4A3O75365 173 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 CIB2O75838 187 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 NDUFB2O95178 105 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 WNT11O96014 354 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 CST1P01037 141 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 IGHMP01871 453 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 PGA4P0DJD7 388 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 PGA3P0DJD8 388 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 ACADSP16219 412 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 FPR3P25089 353 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 ERFP50548 548 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 RPL27P61353 136 aaKnown RBP11.91□□□□□ -0.5
SHMT2-228ENST00000557302 RUNX1T1Q06455 604 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 ARMC4Q5T2S8 1044 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 C1orf146Q5VVC0 180 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 FAM205BPQ63HN1 556 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 SEZ6L2Q6UXD5 910 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 ASRGL1Q7L266 308 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 NOXO1Q8NFA2 376 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 OR4C15Q8NGM1 316 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 MAGEE2Q8TD90 523 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-228ENST00000557302 BCL2L2Q92843 193 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-228ENST00000557302 ZNF837Q96EG3 531 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-228ENST00000557302 PLPPR2Q96GM1 343 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 BOD1Q96IK1 185 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 GPA33Q99795 319 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 KATNB1Q9BVA0 655 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 ESRP2Q9H6T0 727 aaKnown RBP11.91□□□□□ -0.5
SHMT2-228ENST00000557302 YY1AP1Q9H869 796 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 OBP2BQ9NPH6 170 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 ZNF346Q9UL40 294 aaKnown RBP11.91□□□□□ -0.5
SHMT2-228ENST00000557302 SIGLEC7Q9Y286 467 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 POFUT2Q9Y2G5 429 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 MAGED1Q9Y5V3 778 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-228ENST00000557302 CSMD1Q96PZ7 3565 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 HRNRQ86YZ3 2850 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-228ENST00000557302 AKAP6Q13023 2319 aa11.91□□□□□ -0.5
SHMT2-228ENST00000557302 A0A096LPE4 126 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 A0A1W2PPZ6 126 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 A6NIZ1 184 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 GNGT2O14610 69 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 FKBP6O75344 327 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 CCNB2O95067 398 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 CD14P08571 375 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 NR2C1P13056 603 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 ZNF26P17031 533 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-228ENST00000557302 LOXP28300 417 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-228ENST00000557302 ACVR1BP36896 505 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 UBE2NP61088 152 aaKnown RBP11.9□□□□□ -0.5
SHMT2-228ENST00000557302 RAP1BP61224 184 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 RAP1AP62834 184 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 ERVK-25P63136 954 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 PPP1R8Q12972 351 aaKnown RBP11.9□□□□□ -0.5
SHMT2-228ENST00000557302 GK3PQ14409 553 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 C1orf94Q6P1W5 598 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 PGBD2Q6P3X8 592 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 SMARCD3Q6STE5 483 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 KLHL17Q6TDP4 642 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 SYT14Q8NB59 555 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 FANK1Q8TC84 345 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 GNPDA2Q8TDQ7 276 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 HS3ST6Q96QI5 342 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 TSPAN32Q96QS1 320 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 ALG12Q9BV10 488 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 MRPL13Q9BYD1 178 aaKnown RBP11.9□□□□□ -0.5
SHMT2-228ENST00000557302 OCEL1Q9H607 264 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 CCM2LQ9NUG4 571 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-228ENST00000557302 NPAP1Q9NZP6 1156 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 U3KQV3 271 aa11.9□□□□□ -0.5
SHMT2-228ENST00000557302 ARPC4-TTLL3A0A0A6YYG9 625 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 A0A1W2PPR1 153 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 DHHO43323 396 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 TRMUO75648 421 aaKnown RBP11.89□□□□□ -0.51
SHMT2-228ENST00000557302 SEC14L2O76054 403 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 CD3EP07766 207 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 QDPRP09417 244 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 HOXB1P14653 301 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-228ENST00000557302 GSSP48637 474 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 ZNF83P51522 516 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 CD47Q08722 323 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 TSPAN31Q12999 210 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 HIST3H3Q16695 136 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 NCMAPQ5T1S8 102 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 LRFN4Q6PJG9 635 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 ZNF813Q6ZN06 617 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 CCDC36Q8IYA8 594 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 OR9Q2Q8NGE9 314 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 HDAC2Q92769 488 aaKnown RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms