RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TUBAL3	A6NHL2	446 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	HIDE1	A8MVS5	230 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	FZD6	O60353	706 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	DPM1	O60762	260 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	TXNDC12	O95881	172 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	NAGA	P17050	411 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	DEFB103A	P81534	67 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	LTBP1	Q14766	1721 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	EIF2S3L	Q2VIR3	472 aa	Known RBP	4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	GPR157	Q5UAW9	335 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	H3F3C	Q6NXT2	135 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	ADGRE4P	Q86SQ3	457 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMEM200A	Q86VY9	491 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	FNDC9	Q8TBE3	224 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	RAB7B	Q96AH8	199 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	SDHC	Q99643	169 aa	Predicted RBP	4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	PRRG4	Q9BZD6	226 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	FBRS	Q9HAH7	460 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	ADGRL4	Q9HBW9	690 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	SDHAF3	Q9NRP4	125 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005	LOC285556	D6RIA3	1793 aa		4.58	□□□□□ -1.68
SYNE2-223	ENST00000557005		A0A0J9YY10	115 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005		A0A0U1RQK1	487 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC22A23	A1A5C7	686 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	GLCE	O94923	617 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	APBB3	O95704	486 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	IFNA5	P01569	189 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	GLA	P06280	429 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ANKRD34C	P0C6C1	535 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SPI1	P17947	270 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ALDH3B1	P43353	468 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	BDH1	Q02338	343 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	MFSD13A	Q14CX5	517 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	GLYATL3	Q5SZD4	288 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	AKR1C8P	Q5T2L2	129 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SGPP2	Q8IWX5	399 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	RADIL	Q96JH8	1075 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	WDR92	Q96MX6	357 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	PPP4R1L	Q9P1A2	415 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	NDRG3	Q9UGV2	375 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ICK	Q9UPZ9	632 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	HS3ST2	Q9Y278	367 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	EVPL	Q92817	2033 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005		H3BML4	177 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	HSD17B6	O14756	317 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	FCMR	O60667	390 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SBK2	P0C263	348 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ARHGAP19	Q14CB8	494 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ASTL	Q6HA08	431 aa	Predicted RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SEZ6L2	Q6UXD5	910 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005		Q6ZNB5	142 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF695	Q8IW36	515 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	UEVLD	Q8IX04	471 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	KCNRG	Q8N5I3	272 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	DUSP18	Q8NEJ0	188 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	C17orf47	Q8NEP4	570 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	WDR89	Q96FK6	387 aa	Predicted RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC17A9	Q9BYT1	436 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	C11orf49	Q9H6J7	331 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	C6orf106	Q9H6K1	298 aa	Predicted RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	C20orf141	Q9NUB4	165 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	PLEKHJ1	Q9NW61	149 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	UBE2J1	Q9Y385	318 aa	Predicted RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	PARP14	Q460N5	1801 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR6C76	A6NM76	312 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005		K7EPK0	472 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	CTRB1	P17538	263 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ATF1	P18846	271 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SOX9	P48436	509 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	CAV2	P51636	162 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	METAP1	P53582	386 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	GPM6B	Q13491	265 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ELAVL3	Q14576	367 aa	Known RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	NKAIN2	Q5VXU1	208 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	CTRB2	Q6GPI1	263 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	CD300LG	Q6UXG3	332 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SHISA6	Q6ZSJ9	500 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC16A13	Q7RTY0	426 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	MARCH3	Q86UD3	253 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	RASGRP3	Q8IV61	690 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	TCEAL8	Q8IYN2	117 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR2L13	Q8N349	312 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	PRR18	Q8N4B5	295 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	FAM71E2	Q8N5Q1	922 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	RFLNB	Q8N5W9	214 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR4K17	Q8NGC6	315 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	RGP1	Q92546	391 aa	Predicted RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	FGGY	Q96C11	551 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	TCEAL7	Q9BRU2	100 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	PIGM	Q9H3S5	423 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	MBD1	Q9UIS9	605 aa	Predicted RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ING1	Q9UK53	422 aa	Predicted RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	KCNIP3	Q9Y2W7	256 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SERTM1	A2A2V5	107 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR5H14	A6NHG9	310 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	NPIPA2	E9PIF3	369 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	NPIPA3	F8WFD2	350 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SULT1B1	O43704	296 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	TLX3	O43711	291 aa	Predicted RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SCGB1D1	O95968	90 aa		4.57	□□□□□ -1.68

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