RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 ABCA4P78363 2273 aa12.59□□□□□ -0.39
CCDC88C-207ENST00000554051 RAI1Q7Z5J4 1906 aaPredicted RBP12.58□□□□□ -0.39
CCDC88C-207ENST00000554051 CRYBG3Q68DQ2 2970 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 A0A1W2PPR1 153 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 SH3PXD2BA1X283 911 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 AQP12BA6NM10 295 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 M0R1B8 84 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 ABCD4O14678 606 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 AHCYL1O43865 530 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 DNAJC8O75937 253 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 F13BP05160 661 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 ACADSP16219 412 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 MSX2P35548 267 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 GPR4P46093 362 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 LIMS1P48059 325 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 ZNF83P51522 516 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 CDH11P55287 796 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 FOXG1P55316 489 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 RPL27P61353 136 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 LGALS3BPQ08380 585 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 MELKQ14680 651 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 DEFB113Q30KQ7 82 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 ZBED5Q49AG3 693 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 HIKESHIQ53FT3 197 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 ZNF813Q6ZN06 617 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 LINGO2Q7L985 606 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 LSRQ86X29 649 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 AQP12AQ8IXF9 295 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 LRRC75A-AS1Q8N1F1 130 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 TMEM171Q8WVE6 324 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 AKAP1Q92667 903 aaKnown RBP eCLIP12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 TXNDC15Q96J42 360 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 SLC38A2Q96QD8 506 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 GPX7Q96SL4 187 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 BTBD10Q9BSF8 475 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 CXXC4Q9H2H0 198 aa12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 CRNNQ9UBG3 495 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-207ENST00000554051 FBN2P35556 2912 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 TCRBV5S2A0A599 114 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 DPRXA6NFQ7 191 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 UBL3O95164 117 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 NDUFB2O95178 105 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 RAP2AP10114 183 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 CD53P19397 219 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 MAKP20794 623 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 FPR3P25089 353 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 RRM2P31350 389 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 RPL4P36578 427 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 OMPP47874 163 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 ZNF133P52736 654 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 ART1P52961 327 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 IST1P53990 364 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 FOXD4Q12950 439 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 BNIP1Q12981 228 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 HIST3H3Q16695 136 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 IQCCQ4KMZ1 466 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 C10orf128Q5T292 105 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 ARMC4Q5T2S8 1044 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 GPR139Q6DWJ6 353 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 RPL13AP3Q6NVV1 102 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 SLC22A25Q6T423 547 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 IL17RDQ8NFM7 739 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 OR13C2Q8NGS9 318 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 MOSPD2Q8NHP6 518 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 NRGNQ92686 78 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 FAM46AQ96IP4 442 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 RSRC1Q96IZ7 334 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 MRPL13Q9BYD1 178 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 MMADHCQ9H3L0 296 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 NELFAQ9H3P2 528 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 YY1AP1Q9H869 796 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 POU2F3Q9UKI9 436 aa12.57□□□□□ -0.4
CCDC88C-207ENST00000554051 TRAV27A0A087WT01 109 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 TRBV4-1A0A0J9YWV2 114 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 XKRYO14609 159 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 DHHO43323 396 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 SMPD2O60906 423 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 TRMUO75648 421 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 IGKV3-15P01624 115 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 IGLV1-44P01699 117 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 CRYAAP02489 173 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 CD14P08571 375 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 APEHP13798 732 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 B4GALT1P15291 398 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 CBR1P16152 277 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 NPR2P20594 1047 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 CAPZA2P47755 286 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 CTXN1P60606 82 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 TOP3AQ13472 1001 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 FLOT2Q14254 428 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 GSG1Q2KHT4 349 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 ZNF544Q6NX49 715 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 SPNS3Q6ZMD2 512 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 ADCK1Q86TW2 530 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 KBTBD8Q8NFY9 601 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 OR51A7Q8NH64 312 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 GTPBP3Q969Y2 492 aaKnown RBP12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 RBP7Q96R05 134 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 FUZQ9BT04 418 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 GRIP2Q9C0E4 1043 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms