RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 C3orf33Q6P1S2 294 aa23.69■■□□□ 1.38
CCDC88C-205ENST00000553403 CEACAM19Q7Z692 300 aa23.69■■□□□ 1.38
CCDC88C-205ENST00000553403 LAX1Q8IWV1 398 aa23.69■■□□□ 1.38
CCDC88C-205ENST00000553403 INTS14Q96SY0 518 aa23.69■■□□□ 1.38
CCDC88C-205ENST00000553403 ACOXLQ9NUZ1 547 aa23.69■■□□□ 1.38
CCDC88C-205ENST00000553403 B3GALT5Q9Y2C3 310 aa23.69■■□□□ 1.38
CCDC88C-205ENST00000553403 TMEM14AQ9Y6G1 99 aa23.69■■□□□ 1.38
CCDC88C-205ENST00000553403 TBX1O43435 398 aa23.68■■□□□ 1.38
CCDC88C-205ENST00000553403 GPRIN2O60269 458 aa23.68■■□□□ 1.38
CCDC88C-205ENST00000553403 SDHBP21912 280 aa23.68■■□□□ 1.38
CCDC88C-205ENST00000553403 DAP3P51398 398 aaKnown RBP23.68■■□□□ 1.38
CCDC88C-205ENST00000553403 RPS18P62269 152 aaKnown RBP23.68■■□□□ 1.38
CCDC88C-205ENST00000553403 INPP5JQ15735 1006 aaPredicted RBP23.68■■□□□ 1.38
CCDC88C-205ENST00000553403 ACSM3Q53FZ2 586 aa23.68■■□□□ 1.38
CCDC88C-205ENST00000553403 PRAMEF20Q5VT98 475 aa23.68■■□□□ 1.38
CCDC88C-205ENST00000553403 RALGAPA1Q6GYQ0 2036 aa23.68■■□□□ 1.38
CCDC88C-205ENST00000553403 TPRA1Q86W33 373 aa23.68■■□□□ 1.38
CCDC88C-205ENST00000553403 LYSMD2Q8IV50 215 aa23.68■■□□□ 1.38
CCDC88C-205ENST00000553403 ADPRHL1Q8NDY3 354 aa23.68■■□□□ 1.38
CCDC88C-205ENST00000553403 SLC25A43Q8WUT9 341 aaPredicted RBP23.68■■□□□ 1.38
CCDC88C-205ENST00000553403 ZBTB8AQ96BR9 441 aa23.68■■□□□ 1.38
CCDC88C-205ENST00000553403 MIXL1Q9H2W2 232 aa23.68■■□□□ 1.38
CCDC88C-205ENST00000553403 ABCB9Q9NP78 766 aa23.68■■□□□ 1.38
CCDC88C-205ENST00000553403 ABCB10Q9NRK6 738 aa23.68■■□□□ 1.38
CCDC88C-205ENST00000553403 SLC22A23A1A5C7 686 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 TVP23AA6NH52 213 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 DVL2O14641 736 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 MYL9P24844 172 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 CLDN6P56747 220 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 RPS15P62841 145 aaKnown RBP23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 TLE3Q04726 772 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 TMEM164Q5U3C3 297 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 FAM220AQ7Z4H9 259 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 TMEM156Q8N614 296 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 ESX1Q8N693 406 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 ASB10Q8WXI3 467 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 ATF6BQ99941 703 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 RNF32Q9H0A6 362 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 IGLV1-36A0A0B4J1U3 117 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 TRBV2A0A0J9YWF9 115 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 MAGEB3O15480 346 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 AKR7A3O95154 331 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 CAV3P56539 151 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 PPP3R1P63098 170 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 SELENBP1Q13228 472 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 SLC22A10Q63ZE4 541 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 MZT2AQ6P582 158 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 OR6N2Q8NGY6 317 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 HPF1Q9NWY4 346 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 LAMP5Q9UJQ1 280 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 KLHDC2Q9Y2U9 406 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 V9GYH0 126 aa23.67■■□□□ 1.38
CCDC88C-205ENST00000553403 SPTBN4Q9H254 2564 aa23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 A0A1W2PNV4 684 aa23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 SMIM30A4D0T7 59 aa23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 PRR32B1ATL7 298 aa23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 NPIPA5E9PKD4 350 aa23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 H3BML4 177 aa23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 GATBO75879 557 aaKnown RBP23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 TGM1P22735 817 aa23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 SHC1P29353 583 aa23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 CRABP1P29762 137 aa23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 EGR3Q06889 387 aa23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 RSPO4Q2I0M5 234 aaPredicted RBP23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 GLYR1Q49A26 553 aaPredicted RBP23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 ACOT12Q8WYK0 555 aa23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 PHYHIPQ92561 330 aa23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 CCDC86Q9H6F5 360 aaKnown RBP23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 PARD6AQ9NPB6 346 aa23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 NPIPA1Q9UND3 350 aa23.66■■□□□ 1.38
CCDC88C-205ENST00000553403 A0A1W2PNU3 283 aaPredicted RBP23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 ANKRD33BA6NCL7 494 aa23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 HSPB2A8KAH6 182 aa23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 SNPHO15079 494 aa23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 CCL3P10147 92 aa23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 HLA-DOBP13765 273 aa23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 ALOX5APP20292 161 aa23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 MYBPHQ13203 477 aa23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 MELKQ14680 651 aa23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 HSPB2Q16082 182 aa23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 H3F3CQ6NXT2 135 aa23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 TRILQ7L0X0 811 aa23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 FAM83FQ8NEG4 500 aaPredicted RBP23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 NLGN4YQ8NFZ3 816 aaPredicted RBP23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 RELTQ969Z4 430 aa23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 C5orf34Q96MH7 638 aa23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 SDHCQ99643 169 aaPredicted RBP23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 PPIL3Q9H2H8 161 aaKnown RBP23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 PROK2Q9HC23 129 aa23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 MRM2Q9UI43 246 aaKnown RBP23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 CDV3Q9UKY7 258 aaKnown RBP23.65■■□□□ 1.38
CCDC88C-205ENST00000553403 SLC16A7O60669 478 aa23.64■■□□□ 1.38
CCDC88C-205ENST00000553403 NCR1O76036 304 aa23.64■■□□□ 1.38
CCDC88C-205ENST00000553403 PSMB10P40306 273 aa23.64■■□□□ 1.38
CCDC88C-205ENST00000553403 HSF1Q00613 529 aa23.64■■□□□ 1.38
CCDC88C-205ENST00000553403 CSRP2Q16527 193 aa23.64■■□□□ 1.38
CCDC88C-205ENST00000553403 C11orf91Q3C1V1 193 aa23.64■■□□□ 1.38
CCDC88C-205ENST00000553403 ZMAT1Q5H9K5 638 aa23.64■■□□□ 1.38
CCDC88C-205ENST00000553403 STEAP3Q658P3 488 aa23.64■■□□□ 1.38
CCDC88C-205ENST00000553403 SLC35D2Q76EJ3 337 aa23.64■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms