RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 XCL2Q9UBD3 114 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 PEF1Q9UBV8 284 aaKnown RBP3.63□□□□□ -1.83
SCFD1-209ENST00000553280 NAP1L2Q9ULW6 460 aaPredicted RBP3.63□□□□□ -1.83
SCFD1-209ENST00000553280 ZNF256Q9Y2P7 627 aaPredicted RBP3.63□□□□□ -1.83
SCFD1-209ENST00000553280 NEUROG3Q9Y4Z2 214 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 KRTAP4-16G5E9R7 235 aaPredicted RBP3.62□□□□□ -1.83
SCFD1-209ENST00000553280 CLIC3O95833 236 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 ALDOBP05062 364 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 GABRR1P24046 479 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 HMOX2P30519 316 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 CDKN1BP46527 198 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 MRPL19P49406 292 aaKnown RBP3.62□□□□□ -1.83
SCFD1-209ENST00000553280 ACVR1Q04771 509 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 ITIH4Q14624 930 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 GPNMBQ14956 572 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 XKR4Q5GH76 650 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 SCARA5Q6ZMJ2 495 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 ZBED8Q8IZ13 594 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 PDIK1LQ8N165 341 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 PNKDQ8N490 385 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 HSD17B11Q8NBQ5 300 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 OR52K1Q8NGK4 314 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 ARPC1AQ92747 370 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 UCN3Q969E3 161 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 SGK3Q96BR1 496 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 MED8Q96G25 268 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 PLEKHF1Q96S99 279 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 TEKT3Q9BXF9 490 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 OR51J1Q9H342 316 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 SIAEQ9HAT2 523 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 UGT1A10Q9HAW8 530 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 LYRM4Q9HD34 91 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 CNTNAP1P78357 1384 aa3.62□□□□□ -1.83
SCFD1-209ENST00000553280 KCNE1BA0A087WTH5 132 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 A0A0G2JLM5 398 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 KBTBD11-OT1A0A1B0GTJ5 212 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 PSMB11A5LHX3 300 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 E7ENQ6 273 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 TEX46H3BTG2 121 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 CDC7O00311 574 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 EEDO75530 441 aaKnown RBP3.61□□□□□ -1.83
SCFD1-209ENST00000553280 MMP23AO75900 390 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 POLR2MP0CAP2 368 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 BCKDHBP21953 392 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 DCKP27707 260 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 SLC11A1P49279 550 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 TAF6P49848 677 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 SUB1P53999 127 aaKnown RBP eCLIP3.61□□□□□ -1.831e-7■■■■□ 20.1
SCFD1-209ENST00000553280 ADARB1P78563 741 aaKnown RBP3.61□□□□□ -1.83
SCFD1-209ENST00000553280 CYTH1Q15438 398 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 SLC1A5Q15758 541 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 NRF1Q16656 503 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 SOHLH1Q5JUK2 328 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 PPM1LQ5SGD2 360 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 PLCXD3Q63HM9 321 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 TTC19Q6DKK2 380 aaPredicted RBP3.61□□□□□ -1.83
SCFD1-209ENST00000553280 KRTAP5-1Q6L8H4 278 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 ANKRD26P1Q6NSI1 321 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 CNIH2Q6PI25 160 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 P2RY8Q86VZ1 359 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 ZADH2Q8N4Q0 377 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 SLC7A13Q8TCU3 470 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 ZNF75CPQ92670 426 aaPredicted RBP3.61□□□□□ -1.83
SCFD1-209ENST00000553280 RPUSD4Q96CM3 377 aaKnown RBP3.61□□□□□ -1.83
SCFD1-209ENST00000553280 PRRC1Q96M27 445 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 HES7Q9BYE0 225 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 ROGDIQ9GZN7 287 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 DEFB127Q9H1M4 99 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 SRMSQ9H3Y6 488 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 CCNB1IP1Q9NPC3 277 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 SAMSN1Q9NSI8 373 aaKnown RBP3.61□□□□□ -1.83
SCFD1-209ENST00000553280 CLN8Q9UBY8 286 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 SLC25A15Q9Y619 301 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 CDH10Q9Y6N8 788 aa3.61□□□□□ -1.83
SCFD1-209ENST00000553280 ZNF726A6NNF4 738 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 USP27XA6NNY8 438 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 ERI2A8K979 691 aaKnown RBP3.6□□□□□ -1.83
SCFD1-209ENST00000553280 EIF4E2O60573 245 aaKnown RBP3.6□□□□□ -1.83
SCFD1-209ENST00000553280 SRSF10O75494 262 aaKnown RBP3.6□□□□□ -1.83
SCFD1-209ENST00000553280 CLPXO76031 633 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 CHTF8P0CG12 524 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 ICAM2P13598 275 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 PRPS1P60891 318 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 ZNF92Q03936 586 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 ECH1Q13011 328 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 NSDHLQ15738 373 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 KRT71Q3SY84 523 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 TTC23LQ6PF05 361 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 PEX26Q7Z412 305 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 CMTM1Q8IZ96 169 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 ZNF321PQ8N8H1 164 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 OR1N2Q8NGR9 330 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 NEIL3Q8TAT5 605 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 TMEM54Q969K7 222 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 PKNOX2Q96KN3 472 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 MAGEB18Q96M61 343 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 XPO6Q96QU8 1125 aaKnown RBP3.6□□□□□ -1.83
SCFD1-209ENST00000553280 SH3GL3Q99963 347 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 NRIP2Q9BQI9 281 aa3.6□□□□□ -1.83
SCFD1-209ENST00000553280 OR11A1Q9GZK7 315 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms