RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 A0A1B0GUH1 482 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 OR4C45A6NMZ5 311 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 C11orf98E9PRG8 122 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 DOK2O60496 412 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 KDM4BO94953 1096 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 ECDO95905 644 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-213ENST00000552720 ASAH2BP0C7U1 165 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 THEGLP0DJG4 465 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 CTSEP14091 401 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 SDHAP31040 664 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 PRPS1P60891 318 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 YPEL5P62699 121 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 IGLV3-21P80748 117 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-213ENST00000552720 FUT7Q11130 342 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 SKP2Q13309 424 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 HTR4Q13639 388 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 OPCMLQ14982 345 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 TOMM34Q15785 309 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-213ENST00000552720 AANATQ16613 207 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 FNDC7Q5VTL7 733 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 METTL11BQ5VVY1 283 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 FAM198BQ6UWH4 519 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 SLC35D2Q76EJ3 337 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 FAM220AQ7Z4H9 259 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 BPHLQ86WA6 291 aaPredicted RBP6.8□□□□□ -1.32
LIMA1-213ENST00000552720 CDC20BQ86Y33 519 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 PM20D2Q8IYS1 436 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 MEIOBQ8N635 442 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 UXS1Q8NBZ7 420 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 OR51D1Q8NGF3 324 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 OR2G2Q8NGZ5 317 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 LRRC20Q8TCA0 184 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 ZDHHC1Q8WTX9 485 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 TAAR8Q969N4 342 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 CCDC74AQ96AQ1 378 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 OMA1Q96E52 524 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 CMTM3Q96MX0 182 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 GAL3ST1Q99999 423 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 DHRS9Q9BPW9 319 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 NXF5Q9H1B4 397 aaKnown RBP6.8□□□□□ -1.32
LIMA1-213ENST00000552720 MTIF3Q9H2K0 278 aaKnown RBP6.8□□□□□ -1.32
LIMA1-213ENST00000552720 NKX2-4Q9H2Z4 354 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 PTTG3PQ9NZH4 202 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 CLEC1BQ9P126 229 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 KCNG2Q9UJ96 466 aa6.8□□□□□ -1.32
LIMA1-213ENST00000552720 KIR2DS5A0A0G2JLQ3 304 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 A0A0G2JNG1 304 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 TRBV5-5A0A0J9YX44 114 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 ANXA2P2A6NMY6 339 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 C17orf105B2RV13 164 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 KIR2DS3K7RE56 304 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 WNT11O96014 354 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 IFNA7P01567 189 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 ANXA2P07355 339 aaKnown RBP6.79□□□□□ -1.32
LIMA1-213ENST00000552720 IFI6P09912 130 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 UBL4AP11441 157 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 HPGDP15428 266 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 TACR3P29371 465 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 KIR3DL2P43630 455 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 GFERP55789 205 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 PSMA6P60900 246 aaKnown RBP6.79□□□□□ -1.32
LIMA1-213ENST00000552720 IL10RAQ13651 578 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 KIR2DS5Q14953 304 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 PCGF3Q3KNV8 242 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 CLLU1Q5K131 121 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 WDR45BQ5MNZ6 344 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 ELFN2Q5R3F8 820 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 OLFML2AQ68BL7 652 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 WBP2NLQ6ICG8 309 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 LRRN1Q6UXK5 716 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF676Q8N7Q3 588 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 FAM71CQ8NEG0 241 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 OR4C16Q8NGL9 310 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 OR5M1Q8NGP8 315 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-213ENST00000552720 NSMAFQ92636 917 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 DVL3Q92997 716 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-213ENST00000552720 LCORQ96JN0 433 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-213ENST00000552720 SFXN2Q96NB2 322 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 ADOQ96SZ5 270 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 DIABLOQ9NR28 239 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 PNO1Q9NRX1 252 aaKnown RBP6.79□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF224Q9NZL3 707 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 GRHPRQ9UBQ7 328 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 LAMP5Q9UJQ1 280 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 CYP8B1Q9UNU6 501 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 ABCA7Q8IZY2 2146 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 SPTY2D1-AS1A0A0U1RR47 76 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 A0A1W2PPL8 197 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 PLSCR5A0PG75 271 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 FAM221BA6H8Z2 402 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 ACOT7O00154 380 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 GLSO94925 669 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-213ENST00000552720 NDUFB6O95139 128 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 PROS1P07225 676 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 ITGA5P08648 1049 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 TACSTD2P09758 323 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 CALCBP10092 127 aa6.79□□□□□ -1.32
LIMA1-213ENST00000552720 CSRP1P21291 193 aaKnown RBP6.79□□□□□ -1.32
LIMA1-213ENST00000552720 EFNA3P52797 238 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms