RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 SFTPDP35247 375 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 MAGEA12P43365 314 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 ZNF83P51522 516 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 DVL1P1P54792 670 aaPredicted RBP3.05□□□□□ -1.92
LIMA1-206ENST00000550611 CDH13P55290 713 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 CDH15P55291 814 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 DR1Q01658 176 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 RASGEF1BQ0VAM2 473 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 ZNF155Q12901 538 aaPredicted RBP3.05□□□□□ -1.92
LIMA1-206ENST00000550611 FOXF1Q12946 379 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 NAB1Q13506 487 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 IL13RA2Q14627 380 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 HEPACAMQ14CZ8 416 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 TOMM34Q15785 309 aaPredicted RBP3.05□□□□□ -1.92
LIMA1-206ENST00000550611 STK11Q15831 433 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 TMEM176BQ3YBM2 270 aaPredicted RBP3.05□□□□□ -1.92
LIMA1-206ENST00000550611 KLHL26Q53HC5 615 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 SGO1Q5FBB7 561 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 TCHHL1Q5QJ38 904 aaPredicted RBP3.05□□□□□ -1.92
LIMA1-206ENST00000550611 SH2D4BQ5SQS7 431 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 C1QTNF12Q5T7M4 302 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 FAM69AQ5T7M9 428 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 FBXW9Q5XUX1 488 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 AP1ARQ63HQ0 302 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 TTC19Q6DKK2 380 aaPredicted RBP3.05□□□□□ -1.92
LIMA1-206ENST00000550611 CBLN3Q6UW01 205 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 TMEM107Q6UX40 140 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 RPS27LQ71UM5 84 aaKnown RBP3.05□□□□□ -1.92
LIMA1-206ENST00000550611 GALNT5Q7Z7M9 940 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 MISPQ8IVT2 679 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 LRRC8AQ8IWT6 810 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 UEVLDQ8IX04 471 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 SLC35F6Q8N357 371 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 ZNF540Q8NDQ6 660 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 OR52N5Q8NH56 324 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 GPR119Q8TDV5 335 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 ZFP90Q8TF47 636 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 SELENOMQ8WWX9 145 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 PIK3R3Q92569 461 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 HDAC2Q92769 488 aaKnown RBP3.05□□□□□ -1.92
LIMA1-206ENST00000550611 ATP6V1E2Q96A05 226 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 PHF21BQ96EK2 531 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 GIMAP5Q96F15 307 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 APOPT1Q96IL0 206 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 ZNF300Q96RE9 604 aaPredicted RBP3.05□□□□□ -1.92
LIMA1-206ENST00000550611 BBS4Q96RK4 519 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 PIMREGQ9BSJ6 248 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 ACPTQ9BZG2 426 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 BPESC1Q9GZL8 116 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 PLK3Q9H4B4 646 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 C3orf14Q9HBI5 128 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 MYOZ1Q9NP98 299 aaPredicted RBP3.05□□□□□ -1.92
LIMA1-206ENST00000550611 PFDN4Q9NQP4 134 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 SLC17A5Q9NRA2 495 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 UBQLN4Q9NRR5 601 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 NMRK1Q9NWW6 199 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 GRHL1Q9NZI5 618 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 CPSF2Q9P2I0 782 aaKnown RBP3.05□□□□□ -1.92
LIMA1-206ENST00000550611 KLHL9Q9P2J3 617 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 TXNDC16Q9P2K2 825 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 MALT1Q9UDY8 824 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 TMCO1Q9UM00 188 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 ICAM5Q9UMF0 924 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 SNX6Q9UNH7 406 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 SNX24Q9Y343 169 aa3.05□□□□□ -1.92
LIMA1-206ENST00000550611 SIRT4Q9Y6E7 314 aaPredicted RBP3.05□□□□□ -1.92
LIMA1-206ENST00000550611 EXPH5Q8NEV8 1989 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 A0A1W2PR80 420 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 TMEM129A0AVI4 362 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 GJE1A6NN92 205 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 NPIPB9F8W1W9 429 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 M0R1B8 84 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 KIF2AO00139 706 aaPredicted RBP3.04□□□□□ -1.92
LIMA1-206ENST00000550611 TSPAN4O14817 238 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 TBX19O60806 448 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 PDE5AO76074 875 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 OR4F21O95013 312 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 H6PDO95479 791 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 ENO1P06733 434 aaKnown RBP3.04□□□□□ -1.92
LIMA1-206ENST00000550611 RBP1P09455 135 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 ANXA4P09525 319 aaPredicted RBP3.04□□□□□ -1.92
LIMA1-206ENST00000550611 ACP2P11117 423 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 TSPAN8P19075 237 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 PGCP20142 388 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 TIA1P31483 386 aaKnown RBP eCLIP3.04□□□□□ -1.92
LIMA1-206ENST00000550611 SRP14P37108 136 aaKnown RBP3.04□□□□□ -1.92
LIMA1-206ENST00000550611 FRKP42685 505 aaPredicted RBP3.04□□□□□ -1.92
LIMA1-206ENST00000550611 MAGEA4P43358 317 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 KHKP50053 298 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 ZNF84P51523 738 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 IDH3GP51553 393 aaPredicted RBP3.04□□□□□ -1.92
LIMA1-206ENST00000550611 P2RX1P51575 399 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 RPS6KA3P51812 740 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 ZNF41P51814 821 aaPredicted RBP3.04□□□□□ -1.92
LIMA1-206ENST00000550611 NCBP2P52298 156 aaKnown RBP eCLIP3.04□□□□□ -1.92
LIMA1-206ENST00000550611 RPL36AP83881 106 aaKnown RBP3.04□□□□□ -1.92
LIMA1-206ENST00000550611 ZNF117Q03924 483 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 LGALS3BPQ08380 585 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 C2orf80Q0P641 193 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 KIAA0040Q15053 153 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms