RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ARL11Q969Q4 196 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 ELP4Q96EB1 424 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 TNFRSF13CQ96RJ3 184 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 ABHD1Q96SE0 405 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 ATF6BQ99941 703 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 P2RY12Q9H244 342 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 CHST8Q9H2A9 424 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 UBQLN3Q9H347 655 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 CPNE7Q9UBL6 633 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 GLS2Q9UI32 602 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 RPH3AQ9Y2J0 694 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 SNRNP200O75643 2136 aaKnown RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 FRYQ5TBA9 3013 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 DMXL1Q9Y485 3027 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 ASPMQ8IZT6 3477 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 RPS10-NUDT3A0A1W2PQS6 291 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 LANCL1O43813 399 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 FCMRO60667 390 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 UBL3O95164 117 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 CSTAP01040 98 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 ITGA5P08648 1049 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 TDGF1P13385 188 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 IL9P15248 144 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 PPP3CBP16298 524 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF28P17035 718 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 CXCR1P25024 350 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 AGTR1P30556 359 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 GJA4P35212 333 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 NUDT1P36639 197 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 RPS10P46783 165 aaKnown RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 PDZK1IP1Q13113 114 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 OR7A5Q15622 319 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 ST3GAL2Q16842 350 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF322Q6U7Q0 402 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 SLC29A4Q7RTT9 530 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 SLC9B2Q86UD5 537 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 CALHM3Q86XJ0 350 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 SVBPQ8N300 66 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 CHCHD4Q8N4Q1 142 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 OR5T1Q8NG75 326 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 OR51S1Q8NGJ8 323 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 OR5M1Q8NGP8 315 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 RAX2Q96IS3 184 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 TMEM168Q9H0V1 697 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 MIXL1Q9H2W2 232 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 B3GAT2Q9NPZ5 323 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 RXFP3Q9NSD7 469 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 V9GYH0 126 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 A0A087WV62 115 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 A0A0B4J293 547 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 TMEM72A0PK05 275 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 FITM1A5D6W6 292 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 TRAPPC13A5PLN9 417 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 C1QTNF9BB2RNN3 333 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 PRSS44E7EML9 344 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 GAPDHSO14556 408 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 KLK8O60259 260 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 RBMXL2O75526 392 aaKnown RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 GCM2O75603 506 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 CD160O95971 181 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 HOXB5P09067 269 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 THEGLP0DJG4 465 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 MYF5P13349 255 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 ADRB3P13945 408 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF30P17039 623 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 RBMS1P29558 406 aaKnown RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 FRKP42685 505 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 KCNJ5P48544 419 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 CTXN1P60606 82 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 SEC61A1P61619 476 aaKnown RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 TSPAN31Q12999 210 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 EXOSC7Q15024 291 aaKnown RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 SLC9A3R2Q15599 337 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 NHLRC1Q6VVB1 395 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 SLC35D2Q76EJ3 337 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 P4HA3Q7Z4N8 544 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 LRRTM1Q86UE6 522 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 SLC51BQ86UW2 128 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 PM20D2Q8IYS1 436 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 SLC16A11Q8NCK7 471 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 STEAP2Q8NFT2 490 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 OR2L8Q8NGY9 312 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 OR5AK2Q8NH90 309 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 HCAR2Q8TDS4 363 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 NPRL2Q8WTW4 380 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 UCN3Q969E3 161 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 ZBTB8AQ96BR9 441 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 SLC35A4Q96G79 324 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF514Q96K75 400 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 CXorf58Q96LI9 332 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 DMRTA2Q96SC8 542 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 PCBD2Q9H0N5 130 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 BRF2Q9HAW0 419 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 IL21RQ9HBE5 538 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 PDFQ9HBH1 243 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF334Q9HCZ1 680 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 FZD3Q9NPG1 666 aa5.02□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF701Q9NV72 531 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 PLEKHB1Q9UF11 243 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-203ENST00000547825 URGCP-MRPS24S4R325 110 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms