RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 HLA-DOBP13765 273 aa15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 ACADSP16219 412 aa15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 FHL1Q13642 323 aa15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 NRN1LQ496H8 165 aa15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 SFRP5Q5T4F7 317 aa15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 AMIGO2Q86SJ2 522 aa15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 C20orf196Q8IYI0 205 aa15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 TMEM123Q8N131 208 aa15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 GABRG1Q8N1C3 465 aa15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 LRRC75AQ8NAA5 344 aa15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 ASB10Q8WXI3 467 aa15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 KISS1RQ969F8 398 aaPredicted RBP15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 GTPBP3Q969Y2 492 aaKnown RBP15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 ZNF570Q96NI8 536 aa15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 IFT27Q9BW83 186 aa15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 OBP2BQ9NPH6 170 aa15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 MED29Q9NX70 200 aa15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 GLTPQ9NZD2 209 aa15.48■□□□□ 0.07
CLSTN3-210ENST00000540931 CELSR2Q9HCU4 2923 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 A1L4Q6 167 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 H3BN98 237 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 BAG2O95816 211 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 IFNGP01579 166 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 HMGN1P05114 100 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 COX5AP20674 150 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 IL32P24001 234 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 HOXC12P31275 282 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 ACVR1BP36896 505 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 SELENOPP49908 381 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 IST1P53990 364 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 RAD23AP54725 363 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 PPP1R8Q12972 351 aaKnown RBP15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 ARMC4Q5T2S8 1044 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 DNM1P34Q6PK57 102 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 ZNF474Q6S9Z5 364 aaPredicted RBP15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 DPPA2Q7Z7J5 298 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 ICA1LQ8NDH6 482 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 PKP2Q99959 881 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 ULBP2Q9BZM5 246 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 NGBQ9NPG2 151 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 KRT84Q9NSB2 600 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 TBC1D23Q9NUY8 699 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 GALNT8Q9NY28 637 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 ZNF346Q9UL40 294 aaKnown RBP15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 OAZ3Q9UMX2 235 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 ABCA12Q86UK0 2595 aa15.47■□□□□ 0.07
CLSTN3-210ENST00000540931 CIB4A0PJX0 185 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 M0R3G1 203 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 PGA4P0DJD7 388 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 PGA3P0DJD8 388 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 ZNF84P51523 738 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 ELF3P78545 371 aaPredicted RBP15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 TFF3Q07654 80 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 FAPQ12884 760 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 TSPO2Q5TGU0 170 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 KDM4DQ6B0I6 523 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 ZNF787Q6DD87 383 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 SLC27A4Q6P1M0 643 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 TMEM179BQ7Z7N9 219 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 JAZF1Q86VZ6 243 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 LNX2Q8N448 690 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 NOXO1Q8NFA2 376 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 MAGEE2Q8TD90 523 aaPredicted RBP15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 HSD17B8Q92506 261 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 TMEM54Q969K7 222 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 EME1Q96AY2 570 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 TXNDC15Q96J42 360 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 ERMAPQ96PL5 475 aaPredicted RBP15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 GPA33Q99795 319 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 NIPSNAP1Q9BPW8 284 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 SPOCK3Q9BQ16 436 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 MRPL13Q9BYD1 178 aaKnown RBP15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 SEMA6AQ9H2E6 1030 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 VCXQ9H320 206 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 SLC7A10Q9NS82 523 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 KLHL21Q9UJP4 597 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 MAGED1Q9Y5V3 778 aaPredicted RBP15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 LRBAP50851 2863 aa15.46■□□□□ 0.07
CLSTN3-210ENST00000540931 NKX2-6A6NCS4 301 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 PRSS44E7EML9 344 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 RENP00797 406 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 IGFBP5P24593 272 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 COL8A1P27658 744 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 CRABP1P29762 137 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 UGT2B10P36537 528 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 CENPAP49450 140 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 ALDH3A2P51648 485 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 ZNF133P52736 654 aaPredicted RBP15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 ERVK-25P63136 954 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 CAMK2DQ13557 499 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 HIST3H3Q16695 136 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 KLHL17Q6TDP4 642 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 FAM122BQ7Z309 247 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 ZNF519Q8TB69 540 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 MUCL1Q96DR8 90 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 SAMD8Q96LT4 415 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 RDH12Q96NR8 316 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 TSPAN32Q96QS1 320 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 KCNK17Q96T54 332 aa15.45■□□□□ 0.06
CLSTN3-210ENST00000540931 WACQ9BTA9 647 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms