RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 HNRNPKP61978 463 aaKnown RBP eCLIP19.24■□□□□ 0.67
VPS28-205ENST00000526204 EBPQ15125 230 aaKnown RBP19.24■□□□□ 0.67
VPS28-205ENST00000526204 DEFB133Q30KQ1 61 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 METTL11BQ5VVY1 283 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 OLFML2AQ68BL7 652 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 BEST4Q8NFU0 473 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 OR8H1Q8NGG4 311 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 DAZLQ92904 295 aaKnown RBP19.24■□□□□ 0.67
VPS28-205ENST00000526204 NUDT9Q9BW91 350 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 CHRDQ9H2X0 955 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 NKIRAS2Q9NYR9 191 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 TAS2R10Q9NYW0 307 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 TAS2R5Q9NYW4 299 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 KLK11Q9UBX7 282 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 A0A087WV48 116 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 TCRBV16S1A1N1A0A5B0 115 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 TSC22D2O75157 780 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 SLC25A12O75746 678 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 TPOP07202 933 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 ARL4DP49703 201 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 P2RX1P51575 399 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 PER3P56645 1201 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 HSD11B2P80365 405 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 COL19A1Q14993 1142 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 NKAIN2Q5VXU1 208 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 DEFB119Q8N690 84 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 OTOSQ8NHW6 89 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 TTC9Q92623 222 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 DCBLD2Q96PD2 775 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 KLHDC3Q9BQ90 382 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 RTN4RQ9BZR6 473 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 B3GNT2Q9NY97 397 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 NPTNQ9Y639 398 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 SPTBP11277 2137 aa19.23■□□□□ 0.67
VPS28-205ENST00000526204 A0A1B0GUH1 482 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 TSPAN2O60636 221 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 GP1BBP13224 206 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 CENPAP49450 140 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 CAMK2DQ13557 499 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 COL28A1Q2UY09 1125 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 FDX2Q6P4F2 183 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 TMPRSS12Q86WS5 348 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 OR11H4Q8NGC9 324 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 ZDHHC19Q8WVZ1 309 aaPredicted RBP19.22■□□□□ 0.67
VPS28-205ENST00000526204 ASB17Q8WXJ9 295 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 TMEM106AQ96A25 262 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 TBL1XR1Q9BZK7 514 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 DLL4Q9NR61 685 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 ELF5Q9UKW6 265 aaPredicted RBP19.22■□□□□ 0.67
VPS28-205ENST00000526204 NOS1APO75052 506 aaPredicted RBP19.22■□□□□ 0.67
VPS28-205ENST00000526204 NUDT14O95848 222 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 NR0B1P51843 470 aaKnown RBP19.22■□□□□ 0.67
VPS28-205ENST00000526204 BLVRAP53004 296 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 TEX261Q6UWH6 196 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 MARCH3Q86UD3 253 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 ZNF227Q86WZ6 799 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 PM20D2Q8IYS1 436 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 PIAS4Q8N2W9 510 aaPredicted RBP19.22■□□□□ 0.67
VPS28-205ENST00000526204 METTL21AQ8WXB1 218 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 GCDHQ92947 438 aaPredicted RBP19.22■□□□□ 0.67
VPS28-205ENST00000526204 MED30Q96HR3 178 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 RADILQ96JH8 1075 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 COPS7AQ9UBW8 275 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 STEAP1Q9UHE8 339 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 FBXL3Q9UKT7 428 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 U3KQ87 197 aa19.22■□□□□ 0.67
VPS28-205ENST00000526204 HPXP02790 462 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 TAS2R20P59543 309 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 ZP2Q05996 745 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 PLCXD2Q0VAA5 305 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 CBFBQ13951 182 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 SGCBQ16585 318 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 C9orf40Q8IXQ3 194 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 MS4A3Q96HJ5 214 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 ZNF436Q9C0F3 470 aaPredicted RBP19.21■□□□□ 0.67
VPS28-205ENST00000526204 DHCR7Q9UBM7 475 aaKnown RBP19.21■□□□□ 0.67
VPS28-205ENST00000526204 SYPP08247 313 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 DNASE1P24855 282 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 CFPP27918 469 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 PNLIPRP2P54317 469 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 NSDHLQ15738 373 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 TOMM34Q15785 309 aaPredicted RBP19.21■□□□□ 0.67
VPS28-205ENST00000526204 TMEM255AQ5JRV8 349 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 DNM1P46Q6ZS02 220 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 MCHR2Q969V1 340 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 C4orf45Q96LM5 186 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 ELF4Q99607 663 aaPredicted RBP19.21■□□□□ 0.67
VPS28-205ENST00000526204 NRSN2Q9GZP1 204 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 WWTR1Q9GZV5 400 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 PCED1AQ9H1Q7 454 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 LMAN1LQ9HAT1 526 aa19.21■□□□□ 0.67
VPS28-205ENST00000526204 TRAV8-7A0A075B6U6 113 aa19.2■□□□□ 0.66
VPS28-205ENST00000526204 A0A1B0GTH9 108 aa19.2■□□□□ 0.66
VPS28-205ENST00000526204 GMFGO60234 142 aa19.2■□□□□ 0.66
VPS28-205ENST00000526204 MAS1P04201 325 aa19.2■□□□□ 0.66
VPS28-205ENST00000526204 FBLP22087 321 aaKnown RBP19.2■□□□□ 0.66
VPS28-205ENST00000526204 VEGFCP49767 419 aa19.2■□□□□ 0.66
VPS28-205ENST00000526204 POLR2HP52434 150 aaKnown RBP19.2■□□□□ 0.66
VPS28-205ENST00000526204 RPL27P61353 136 aaKnown RBP19.2■□□□□ 0.66
VPS28-205ENST00000526204 STPG1Q5TH74 334 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms