RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 GJE1A6NN92 205 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 HYAL3O43820 417 aaPredicted RBP11.64□□□□□ -0.55
USP53-209ENST00000514665 ZNF254O75437 659 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 UBBP0CG47 229 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 UBCP0CG48 685 aaKnown RBP11.64□□□□□ -0.55
USP53-209ENST00000514665 SPNP16150 400 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 UBE2NP61088 152 aaKnown RBP11.64□□□□□ -0.55
USP53-209ENST00000514665 TIAL1Q01085 375 aaKnown RBP eCLIP11.64□□□□□ -0.55
USP53-209ENST00000514665 SNIP1Q8TAD8 396 aaKnown RBP11.64□□□□□ -0.55
USP53-209ENST00000514665 HSD17B8Q92506 261 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 CCDC86Q9H6F5 360 aaKnown RBP11.64□□□□□ -0.55
USP53-209ENST00000514665 FAM86C1Q9NVL1 165 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 PCDHGA1Q9Y5H4 931 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 ZNF318Q5VUA4 2279 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 DOCK5Q9H7D0 1870 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 CNOT1A5YKK6 2376 aaKnown RBP11.64□□□□□ -0.55
USP53-209ENST00000514665 TLCD2A6NGC4 264 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 BPNT1O95861 308 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 SERPINE2P07093 398 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 MECP2P51608 486 aaKnown RBP11.64□□□□□ -0.55
USP53-209ENST00000514665 CLDN17P56750 224 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 SELENOVP59797 346 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 DUSP8Q13202 625 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 SELENBP1Q13228 472 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 DUSP6Q16828 381 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 FAAP20Q6NZ36 180 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 ADGRF3Q8IZF5 1079 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 OR51S1Q8NGJ8 323 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 GCDHQ92947 438 aaPredicted RBP11.64□□□□□ -0.55
USP53-209ENST00000514665 RAB3CQ96E17 227 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 ARHGAP9Q9BRR9 750 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 PBDC1Q9BVG4 233 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 ENY2Q9NPA8 101 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 COA3Q9Y2R0 106 aaPredicted RBP11.64□□□□□ -0.55
USP53-209ENST00000514665 TRIOBPQ9H2D6 2365 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 NSG1A0A0A6YYJ2 146 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 A0A0B4J2A0 478 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 TNFRSF10CO14798 259 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 SPI1P17947 270 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 RAB6AP20340 208 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 NUDT1P36639 197 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 FOLR3P41439 243 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 HSD17B7P56937 341 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 CD300CQ08708 224 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 VWA2Q5GFL6 755 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 LYSMD4Q5XG99 296 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 TMEM215Q68D42 235 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 KANSL1Q7Z3B3 1105 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 ZNF454Q8N9F8 522 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 RHBDD1Q8TEB9 315 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 PBX4Q9BYU1 374 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 PLSCR3Q9NRY6 295 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 SHPKQ9UHJ6 478 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 ANKRD34BA5PLL1 514 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 A8MVM7 634 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 F10P00742 488 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 BLVRBP30043 206 aaPredicted RBP11.63□□□□□ -0.55
USP53-209ENST00000514665 CX3CR1P49238 355 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 OR1D5P58170 312 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 BCL2A1Q16548 175 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 DCXRQ7Z4W1 244 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 C10orf111Q8N326 155 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 OR1J4Q8NGS1 313 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 RNF170Q96K19 258 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 ZNF285Q96NJ3 590 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 OR6C1Q96RD1 312 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 NRTNQ99748 197 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 TSPAN10Q9H1Z9 355 aaPredicted RBP11.63□□□□□ -0.55
USP53-209ENST00000514665 A4GNTQ9UNA3 340 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 PDGFAP04085 211 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 MTCP1P56278 107 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 UBE2MP61081 183 aaKnown RBP11.63□□□□□ -0.55
USP53-209ENST00000514665 C17orf67Q0P5P2 114 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 TMEM196Q5HYL7 178 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 AKR1C8PQ5T2L2 129 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 C1orf140Q5VVS0 124 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 OPN5Q6U736 354 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 SLC16A9Q7RTY1 509 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 EID2Q8N6I1 236 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 CCDC71LQ8N9Z2 235 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 GPR32P1Q8NGA4 272 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 ZNF845Q96IR2 970 aaPredicted RBP11.63□□□□□ -0.55
USP53-209ENST00000514665 C19orf43Q9BQ61 176 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 OR11A1Q9GZK7 315 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 SRRQ9GZT4 340 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 GLS2Q9UI32 602 aa11.63□□□□□ -0.55
USP53-209ENST00000514665 POLR2AP24928 1970 aaKnown RBP11.63□□□□□ -0.55
USP53-209ENST00000514665 KCNE1BA0A087WTH5 132 aa11.62□□□□□ -0.55
USP53-209ENST00000514665 SURF4O15260 269 aa11.62□□□□□ -0.55
USP53-209ENST00000514665 ZNF44P15621 663 aa11.62□□□□□ -0.55
USP53-209ENST00000514665 RIPPLY1Q0D2K3 151 aa11.62□□□□□ -0.55
USP53-209ENST00000514665 SLC16A12Q6ZSM3 486 aa11.62□□□□□ -0.55
USP53-209ENST00000514665 CREB3L2Q70SY1 520 aa11.62□□□□□ -0.55
USP53-209ENST00000514665 OR10K1Q8NGX5 313 aa11.62□□□□□ -0.55
USP53-209ENST00000514665 C16orf52Q8NHV5 167 aa11.62□□□□□ -0.55
USP53-209ENST00000514665 PPA2Q9H2U2 334 aa11.62□□□□□ -0.55
USP53-209ENST00000514665 KCNJ16Q9NPI9 418 aa11.62□□□□□ -0.55
USP53-209ENST00000514665 RPS10P5Q9NQ39 176 aa11.62□□□□□ -0.55
USP53-209ENST00000514665 GLTPQ9NZD2 209 aa11.62□□□□□ -0.55
USP53-209ENST00000514665 MRPS28Q9Y2Q9 187 aaKnown RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms