RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 ARMC10Q8N2F6 343 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 SRFBP1Q8NEF9 429 aaKnown RBP6.72□□□□□ -1.33
CLIP1-205ENST00000514271 UBASH3BQ8TF42 649 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 PEX11GQ96HA9 241 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 ZNF285Q96NJ3 590 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 DPCDQ9BVM2 203 aaPredicted RBP6.72□□□□□ -1.33
CLIP1-205ENST00000514271 CMC2Q9NRP2 79 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 GRHPRQ9UBQ7 328 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 SPTBN5Q9NRC6 3674 aaKnown RBP6.72□□□□□ -1.33
CLIP1-205ENST00000514271 IGHV5-10-1A0A0J9YXX1 117 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 A0A1W2PQM1 296 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 TCRBV16S1A1N1A0A5B0 115 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 URADA6NGE7 173 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 SRSF10O75494 262 aaKnown RBP6.72□□□□□ -1.33
CLIP1-205ENST00000514271 SLC2A10O95528 541 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 SMIM10L1P0DMW3 83 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 GIFP27352 417 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 PREPP48147 710 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 OR1D5P58170 312 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 SMIM11AP58511 58 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 TBPL1P62380 186 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 CXADRP78310 365 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 CRMP1Q14194 572 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 SYPL1Q16563 259 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 FAM27D1Q5T7N8 215 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 PWWP2BQ6NUJ5 590 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 ZNF793Q6ZN11 406 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 SPPL2AQ8TCT8 520 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 LIPHQ8WWY8 451 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 SGTBQ96EQ0 304 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 SMIM10Q96HG1 83 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 GPX7Q96SL4 187 aaPredicted RBP6.72□□□□□ -1.33
CLIP1-205ENST00000514271 EFCAB11Q9BUY7 163 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 KRTAP3-3Q9BYR6 98 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 KRTAP3-2Q9BYR7 98 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 AUNIPQ9H7T9 357 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 SIDT1Q9NXL6 827 aaKnown RBP6.72□□□□□ -1.33
CLIP1-205ENST00000514271 CTSFQ9UBX1 484 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 CHRNA9Q9UGM1 479 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 KCNE5Q9UJ90 142 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 WASF3Q9UPY6 502 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 RASD1Q9Y272 281 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 KCNE3Q9Y6H6 103 aa6.72□□□□□ -1.33
CLIP1-205ENST00000514271 GSAPA4D1B5 854 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 RPL36A-HNRNPH2H7BZ11 118 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 I3L521 148 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 CD74P04233 296 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 SPI1P17947 270 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 PDHA2P29803 388 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 AHRP35869 848 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 RAP2BP61225 183 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 SEC61A1P61619 476 aaKnown RBP6.71□□□□□ -1.33
CLIP1-205ENST00000514271 SNRPNP63162 240 aaKnown RBP6.71□□□□□ -1.33
CLIP1-205ENST00000514271 TGM3Q08188 693 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 C1DQ13901 141 aaKnown RBP6.71□□□□□ -1.33
CLIP1-205ENST00000514271 FGFBP1Q14512 234 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 PRAMEF14Q5SWL7 426 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 DCAF12Q5T6F0 453 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 PRAMEF13Q5VWM6 474 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 C3P1Q6ZMU1 363 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 MEPCEQ7L2J0 689 aaKnown RBP6.71□□□□□ -1.33
CLIP1-205ENST00000514271 C17orf64Q86WR6 236 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 KRT78Q8N1N4 520 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 AMER3Q8N944 861 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 C19orf47Q8N9M1 422 aaKnown RBP6.71□□□□□ -1.33
CLIP1-205ENST00000514271 KDF1Q8NAX2 398 aaPredicted RBP6.71□□□□□ -1.33
CLIP1-205ENST00000514271 OR8K3Q8NH51 312 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 FLVCR1-AS1Q8TAF5 88 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 SKA2Q8WVK7 121 aaPredicted RBP6.71□□□□□ -1.33
CLIP1-205ENST00000514271 ZNRF4Q8WWF5 429 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 PMEPA1Q969W9 287 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 SMIM19Q96E16 107 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 GLIPR2Q9H4G4 154 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 CYTL1Q9NRR1 136 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 COMMD3Q9UBI1 195 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 RARRES3Q9UL19 164 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 MOKQ9UQ07 419 aa6.71□□□□□ -1.33
CLIP1-205ENST00000514271 TMEM184BQ9Y519 407 aaPredicted RBP6.71□□□□□ -1.33
CLIP1-205ENST00000514271 C2orf92A0A1B0GVN3 265 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 SPAARA0A1B0GVQ0 90 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 C5orf52A6NGY3 159 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 CHST10O43529 356 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 IFNA16P05015 189 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 CD46P15529 392 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 ADRA2CP18825 462 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 TSFMP43897 325 aaKnown RBP6.71□□□□□ -1.34
CLIP1-205ENST00000514271 PRDX1Q06830 199 aaKnown RBP6.71□□□□□ -1.34
CLIP1-205ENST00000514271 SERTAD2Q14140 314 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 DCAF12L2Q5VW00 463 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 MED27Q6P2C8 311 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 FRRS1Q6ZNA5 592 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 TMUB2Q71RG4 321 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 LRRC75AQ8NAA5 344 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 OR5AR1Q8NGP9 310 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 ZNF671Q8TAW3 534 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 TMEM203Q969S6 136 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 MESP1Q9BRJ9 268 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 ZNF416Q9BWM5 594 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 MED28Q9H204 178 aa6.71□□□□□ -1.34
CLIP1-205ENST00000514271 LOXL2Q9Y4K0 774 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms