RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 RETREG3Q86VR2 466 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 TMEM123Q8N131 208 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 OR4A15Q8NGL6 344 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 WFDC12Q8WWY7 111 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 POP5Q969H6 163 aaKnown RBP13.99□□□□□ -0.17
VIM-208ENST00000497849 TMIGD2Q96BF3 282 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 OR2M2Q96R28 347 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 MMP27Q9H306 513 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 HINT3Q9NQE9 182 aaKnown RBP13.99□□□□□ -0.17
VIM-208ENST00000497849 RLIMQ9NVW2 624 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 TAAR3PQ9P1P4 343 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 LEF1Q9UJU2 399 aaPredicted RBP13.99□□□□□ -0.17
VIM-208ENST00000497849 PPIAL4EA0A075B759 164 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 PPIAL4CA0A0B4J2A2 164 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 CLDN25C9JDP6 229 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 PPIAL4DF5H284 164 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 M0R3G1 203 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 RNASET2O00584 256 aaKnown RBP13.98□□□□□ -0.17
VIM-208ENST00000497849 TRAF3IP2O43734 574 aaPredicted RBP13.98□□□□□ -0.17
VIM-208ENST00000497849 SLC22A3O75751 556 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 ALX3O95076 343 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 PPIAL4FP0DN26 164 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 UQCRC2P22695 453 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 GIPRP48546 466 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 PTDSS1P48651 473 aaKnown RBP13.98□□□□□ -0.17
VIM-208ENST00000497849 FBLN7Q53RD9 439 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 ARMCX4Q5H9R4 360 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 RHOUQ7L0Q8 258 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 ZNF771Q7L3S4 317 aaPredicted RBP13.98□□□□□ -0.17
VIM-208ENST00000497849 TREML1Q86YW5 311 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 FUNDC1Q8IVP5 155 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 MIER2Q8N344 545 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 CADM2Q8N3J6 435 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 PIK3C3Q8NEB9 887 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 MFSD8Q8NHS3 518 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 PTDSS2Q9BVG9 487 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 MMP26Q9NRE1 261 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 SDR39U1Q9NRG7 319 aaPredicted RBP13.98□□□□□ -0.17
VIM-208ENST00000497849 NKIRAS2Q9NYR9 191 aa13.98□□□□□ -0.17
VIM-208ENST00000497849 IGLV3-9A0A075B6K5 115 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 IL7RP16871 459 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 S100A3P33764 101 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 ATP4BP51164 291 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 PCGF3Q3KNV8 242 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 AGKQ53H12 422 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 WBP2NLQ6ICG8 309 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 TMEM154Q6P9G4 183 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 USP51Q70EK9 711 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 ZNF627Q7L945 461 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 ANKRD46Q86W74 232 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 C1QL4Q86Z23 238 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 ZNF584Q8IVC4 421 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 STON2Q8WXE9 905 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 SLC25A36Q96CQ1 311 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 NEURL3Q96EH8 262 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 OXGR1Q96P68 337 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 TRNT1Q96Q11 434 aaKnown RBP13.97□□□□□ -0.17
VIM-208ENST00000497849 GAL3ST1Q99999 423 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 ZIM2Q9NZV7 527 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 SLC7A8Q9UHI5 535 aa13.97□□□□□ -0.17
VIM-208ENST00000497849 CDHR4A6H8M9 788 aa13.96□□□□□ -0.17
VIM-208ENST00000497849 CPSF4O95639 269 aaKnown RBP13.96□□□□□ -0.17
VIM-208ENST00000497849 STX1BP61266 288 aa13.96□□□□□ -0.17
VIM-208ENST00000497849 RAB1AP62820 205 aa13.96□□□□□ -0.17
VIM-208ENST00000497849 TEKQ02763 1124 aa13.96□□□□□ -0.17
VIM-208ENST00000497849 EGR4Q05215 589 aa13.96□□□□□ -0.17
VIM-208ENST00000497849 RAB39AQ14964 217 aa13.96□□□□□ -0.17
VIM-208ENST00000497849 RGS7BPQ6MZT1 257 aaPredicted RBP13.96□□□□□ -0.17
VIM-208ENST00000497849 ZNF813Q6ZN06 617 aa13.96□□□□□ -0.17
VIM-208ENST00000497849 LRRC74BQ6ZQY2 392 aa13.96□□□□□ -0.17
VIM-208ENST00000497849 OR8J2Q8NGG1 315 aa13.96□□□□□ -0.17
VIM-208ENST00000497849 STK35Q8TDR2 534 aa13.96□□□□□ -0.17
VIM-208ENST00000497849 GTF3AQ92664 365 aaKnown RBP13.96□□□□□ -0.17
VIM-208ENST00000497849 RAB1CQ92928 201 aa13.96□□□□□ -0.17
VIM-208ENST00000497849 ZBTB18Q99592 522 aa13.96□□□□□ -0.17
VIM-208ENST00000497849 CITED1Q99966 193 aa13.96□□□□□ -0.17
VIM-208ENST00000497849 SAR1AQ9NR31 198 aa13.96□□□□□ -0.17
VIM-208ENST00000497849 PURGQ9UJV8 347 aaKnown RBP13.96□□□□□ -0.17
VIM-208ENST00000497849 SOX21Q9Y651 276 aaPredicted RBP13.96□□□□□ -0.17
VIM-208ENST00000497849 A0A096LPI6 279 aa13.95□□□□□ -0.18
VIM-208ENST00000497849 EBAG9O00559 213 aa13.95□□□□□ -0.18
VIM-208ENST00000497849 FZD7O75084 574 aa13.95□□□□□ -0.18
VIM-208ENST00000497849 DCTN3O75935 186 aa13.95□□□□□ -0.18
VIM-208ENST00000497849 AHSA1O95433 338 aa13.95□□□□□ -0.18
VIM-208ENST00000497849 RAB36O95755 333 aa13.95□□□□□ -0.18
VIM-208ENST00000497849 DBIP07108 87 aaKnown RBP13.95□□□□□ -0.18
VIM-208ENST00000497849 PRG2P13727 222 aa13.95□□□□□ -0.18
VIM-208ENST00000497849 B4GALT1P15291 398 aa13.95□□□□□ -0.18
VIM-208ENST00000497849 ZNF250P15622 560 aa13.95□□□□□ -0.18
VIM-208ENST00000497849 PCGF2P35227 344 aa13.95□□□□□ -0.18
VIM-208ENST00000497849 RPS5P46782 204 aaKnown RBP13.95□□□□□ -0.18
VIM-208ENST00000497849 POLR2JP52435 117 aaKnown RBP13.95□□□□□ -0.18
VIM-208ENST00000497849 CLNS1AP54105 237 aaKnown RBP13.95□□□□□ -0.18
VIM-208ENST00000497849 MFSD13AQ14CX5 517 aa13.95□□□□□ -0.18
VIM-208ENST00000497849 HFEQ30201 348 aa13.95□□□□□ -0.18
VIM-208ENST00000497849 METTL21CQ5VZV1 264 aa13.95□□□□□ -0.18
VIM-208ENST00000497849 SPATC1Q76KD6 591 aa13.95□□□□□ -0.18
VIM-208ENST00000497849 C20orf196Q8IYI0 205 aa13.95□□□□□ -0.18
VIM-208ENST00000497849 ZNF440Q8IYI8 595 aa13.95□□□□□ -0.18
VIM-208ENST00000497849 KIR3DL3Q8N743 410 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms