RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 RPL4P36578 427 aaKnown RBP13.93□□□□□ -0.18
LIME1-209ENST00000494776 CDH11P55287 796 aa13.93□□□□□ -0.18
LIME1-209ENST00000494776 CTXN1P60606 82 aa13.93□□□□□ -0.18
LIME1-209ENST00000494776 ZNF672Q499Z4 452 aaPredicted RBP13.93□□□□□ -0.18
LIME1-209ENST00000494776 ZNF813Q6ZN06 617 aa13.93□□□□□ -0.18
LIME1-209ENST00000494776 TMPRSS11FQ6ZWK6 438 aa13.93□□□□□ -0.18
LIME1-209ENST00000494776 CCDC36Q8IYA8 594 aa13.93□□□□□ -0.18
LIME1-209ENST00000494776 ZNF611Q8N823 705 aa13.93□□□□□ -0.18
LIME1-209ENST00000494776 SYT14Q8NB59 555 aa13.93□□□□□ -0.18
LIME1-209ENST00000494776 OR13C2Q8NGS9 318 aa13.93□□□□□ -0.18
LIME1-209ENST00000494776 ASB10Q8WXI3 467 aa13.93□□□□□ -0.18
LIME1-209ENST00000494776 NEUROG1Q92886 237 aa13.93□□□□□ -0.18
LIME1-209ENST00000494776 MBD6Q96DN6 1003 aa13.93□□□□□ -0.18
LIME1-209ENST00000494776 FAM46AQ96IP4 442 aaKnown RBP13.93□□□□□ -0.18
LIME1-209ENST00000494776 CLPTM1LQ96KA5 538 aa13.93□□□□□ -0.18
LIME1-209ENST00000494776 TNFRSF13CQ96RJ3 184 aa13.93□□□□□ -0.18
LIME1-209ENST00000494776 FOXC2Q99958 501 aa13.93□□□□□ -0.18
LIME1-209ENST00000494776 KCNS3Q9BQ31 491 aa13.93□□□□□ -0.18
LIME1-209ENST00000494776 MOV10Q9HCE1 1003 aaKnown RBP13.93□□□□□ -0.18
LIME1-209ENST00000494776 BEX4Q9NWD9 120 aaPredicted RBP13.93□□□□□ -0.18
LIME1-209ENST00000494776 TMCC3Q9ULS5 477 aa13.93□□□□□ -0.18
LIME1-209ENST00000494776 ANKRD17O75179 2603 aaKnown RBP13.93□□□□□ -0.18
LIME1-209ENST00000494776 SMPD2O60906 423 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 QDPRP09417 244 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 TSPAN19P0C672 248 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 PGA4P0DJD7 388 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 PGA3P0DJD8 388 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 ACADSP16219 412 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 RRM2P31350 389 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 RPS4XP62701 263 aaKnown RBP13.92□□□□□ -0.18
LIME1-209ENST00000494776 MS4A2Q01362 244 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 ZBED5Q49AG3 693 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 FAM98BQ52LJ0 330 aaKnown RBP13.92□□□□□ -0.18
LIME1-209ENST00000494776 LCN8Q6JVE9 175 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 IGFN1Q86VF2 1251 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 OR4K5Q8NGD3 323 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 LILRB1Q8NHL6 650 aaPredicted RBP13.92□□□□□ -0.18
LIME1-209ENST00000494776 TMEM171Q8WVE6 324 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 POP5Q969H6 163 aaKnown RBP13.92□□□□□ -0.18
LIME1-209ENST00000494776 ASB9Q96DX5 294 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 SLC38A2Q96QD8 506 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 ALPK1Q96QP1 1244 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 FOXB1Q99853 325 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 TRIM15Q9C019 465 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 TXNIPQ9H3M7 391 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 NELFAQ9H3P2 528 aa13.92□□□□□ -0.18
LIME1-209ENST00000494776 CISD1Q9NZ45 108 aaKnown RBP13.92□□□□□ -0.18
LIME1-209ENST00000494776 HRNRQ86YZ3 2850 aaPredicted RBP13.92□□□□□ -0.18
LIME1-209ENST00000494776 CENPBD1B2RD01 187 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 SHISA9B4DS77 424 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 CDC42EP2O14613 210 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 ENTPD5O75356 428 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 TRMUO75648 421 aaKnown RBP13.91□□□□□ -0.18
LIME1-209ENST00000494776 CD79AP11912 226 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 B4GALT1P15291 398 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 ACVR1BP36896 505 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 ZNF84P51523 738 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 RPL27P61353 136 aaKnown RBP13.91□□□□□ -0.18
LIME1-209ENST00000494776 MYBPC1Q00872 1141 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 CHRNB3Q05901 458 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 RUNX1T1Q06455 604 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 SPOCK1Q08629 439 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 CD47Q08722 323 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 SEC23BQ15437 767 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 IQCCQ4KMZ1 466 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 LRFN4Q6PJG9 635 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 NOXO1Q8NFA2 376 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 SMAP2Q8WU79 429 aaPredicted RBP13.91□□□□□ -0.18
LIME1-209ENST00000494776 NANOS1Q8WY41 292 aaKnown RBP13.91□□□□□ -0.18
LIME1-209ENST00000494776 DHRS1Q96LJ7 313 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 BTBD10Q9BSF8 475 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 FAIMQ9NVQ4 179 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 ZNF346Q9UL40 294 aaKnown RBP13.91□□□□□ -0.18
LIME1-209ENST00000494776 LAMP3Q9UQV4 416 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 ATP23Q9Y6H3 246 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 OTOGQ6ZRI0 2925 aa13.91□□□□□ -0.18
LIME1-209ENST00000494776 SPG11Q96JI7 2443 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 TCRBV5S2A0A599 114 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 SH3PXD2BA1X283 911 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 NPIPB13A6NJU9 1138 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 NPIPB4C9JG80 1138 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 DHHO43323 396 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 OR10H3O60404 316 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 NR2C1P13056 603 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 IFNGR2P38484 337 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 OMPP47874 163 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 TRAP1Q12931 704 aaKnown RBP13.9□□□□□ -0.18
LIME1-209ENST00000494776 NPRL3Q12980 569 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 ARMC4Q5T2S8 1044 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 PIWIL3Q7Z3Z3 882 aaKnown RBP13.9□□□□□ -0.18
LIME1-209ENST00000494776 MCHR2Q969V1 340 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 KATNB1Q9BVA0 655 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 MRPL13Q9BYD1 178 aaKnown RBP13.9□□□□□ -0.18
LIME1-209ENST00000494776 CXorf56Q9H5V9 222 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 MAGIXQ9H6Y5 334 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 GRHPRQ9UBQ7 328 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 PRR14LQ5THK1 2151 aa13.9□□□□□ -0.18
LIME1-209ENST00000494776 IGHV1-18A0A0C4DH31 117 aa13.89□□□□□ -0.19
LIME1-209ENST00000494776 UNC119BA6NIH7 251 aa13.89□□□□□ -0.19
LIME1-209ENST00000494776 A6NIZ1 184 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms