RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 TAS2R43P59537 309 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 CTXN1P60606 82 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 EGR4Q05215 589 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 UBXN2BQ14CS0 331 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 LSM14AQ8ND56 463 aaKnown RBP15□□□□□ -0.01
CCDC88B-210ENST00000494566 OR2T27Q8NH04 317 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 ZNF563Q8TA94 476 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 FOXQ1Q9C009 403 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 ICOSLGO75144 302 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 UTS2O95399 124 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 UBL4AP11441 157 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 PSMB1P20618 241 aaKnown RBP15□□□□□ -0.01
CCDC88B-210ENST00000494566 CSNK1EP49674 416 aaKnown RBP15□□□□□ -0.01
CCDC88B-210ENST00000494566 DIO1P49895 249 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 SLC37A1P57057 533 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 FAM199XQ6PEV8 388 aaPredicted RBP15□□□□□ -0.01
CCDC88B-210ENST00000494566 MAMSTRQ6ZN01 415 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 DPY19L2P2Q6ZN68 376 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 SPERTQ8NA61 448 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 RELL2Q8NC24 303 aaPredicted RBP15□□□□□ -0.01
CCDC88B-210ENST00000494566 OR56B4Q8NH76 319 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 RGP1Q92546 391 aaPredicted RBP15□□□□□ -0.01
CCDC88B-210ENST00000494566 TAS2R10Q9NYW0 307 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 GMEB2Q9UKD1 530 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 FER1L5A0AVI2 2057 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 ZNF749O43361 778 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 NME1P15531 152 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 PTBP1P26599 531 aaKnown RBP eCLIP14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 HSD17B7P56937 341 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 LRRC37A5PQ49AS3 106 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 BEX5Q5H9J7 111 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 SYT13Q7L8C5 426 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 TPRA1Q86W33 373 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 OR14A16Q8NHC5 309 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 ALG12Q9BV10 488 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 LANCL2Q9NS86 450 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 PCP4L1A6NKN8 68 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 PYCARD-AS1I3L0S3 204 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 SCDO00767 359 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 SPDEFO95238 335 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 ACSM4P0C7M7 580 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 ITPKBP27987 946 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 GRK6P43250 576 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 POU4F2Q12837 409 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 SKP2Q13309 424 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 C11orf88Q6PI97 169 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 SMIM4Q8WVI0 70 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 ATOH1Q92858 354 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 CUTCQ9NTM9 273 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 PCDHGA9Q9Y5G4 932 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 B8ZZF3 427 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 C11orf98E9PRG8 122 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 ARL6IP5O75915 188 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 KDM4BO94953 1096 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 NUDT14O95848 222 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 PLGP00747 810 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 EFNB2P52799 333 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 SKP1P63208 163 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 PITPNAQ00169 270 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 ZNF74Q16587 644 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 ATG4DQ86TL0 474 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 GKN2Q86XP6 184 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 GLB1L2Q8IW92 636 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 MNTQ99583 582 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 OR5V1Q9UGF6 321 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 SCP2D1Q9UJQ7 156 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 CAMK2AQ9UQM7 478 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 SLC6A5Q9Y345 797 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 MAB21L2Q9Y586 359 aa14.99□□□□□ -0.01
CCDC88B-210ENST00000494566 LINC00862A6NCI5 91 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 OGG1O15527 345 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 KRT33AO76009 404 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 TACR3P29371 465 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 GRM7Q14831 915 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 ATXN7L3Q14CW9 347 aaPredicted RBP14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 COL28A1Q2UY09 1125 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 ALG10Q5BKT4 473 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 LINC01590Q5TEZ4 76 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 B3GNTL1Q67FW5 361 aaPredicted RBP14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 C16orf47Q6ZP98 133 aaPredicted RBP14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 SLC35D2Q76EJ3 337 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 MARCH3Q86UD3 253 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 JAZF1Q86VZ6 243 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 SLC2A12Q8TD20 617 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 DMRTA2Q96SC8 542 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 LPAR4Q99677 370 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 CHST6Q9GZX3 395 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 UBQLN4Q9NRR5 601 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 A0A1W2PR77 199 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 IFITM5A6NNB3 132 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 RHPN2P1A8MT19 583 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 HCRTR2O43614 444 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 TUSC1Q2TAM9 212 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 FAM74A1Q5RGS3 127 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 STPG2Q8N412 459 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 STK35Q8TDR2 534 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 FCAMRQ8WWV6 532 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 RBPMSQ93062 196 aaKnown RBP14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 ARL6Q9H0F7 186 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms