RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 NXPH4O95158 308 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 VAMP5O95183 116 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 H6PDO95479 791 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 CXCL14O95715 111 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TGM6O95932 706 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 OTCP00480 354 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 GOT2P00505 430 aaKnown RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 FGGP02679 453 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 OPN1LWP04000 364 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 IFNA4P05014 189 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 PCCAP05165 728 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 IGFBP1P08833 259 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ZDHHC11BP0C7U3 371 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SMIM6P0DI80 62 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 RD3LP0DJH9 198 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SLC2A1P11166 492 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 MBL2P11226 248 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 XRCC1P18887 633 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 MAGP20916 626 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 CPN2P22792 545 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 PRDX6P30041 224 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 FDFT1P37268 417 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 GRIA1P42261 906 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 CRATP43155 626 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SYKP43405 635 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 MAP2K4P45985 399 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 YAP1P46937 504 aaKnown RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SLC11A1P49279 550 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 NT5C2P49902 561 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF41P51814 821 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 NDST1P52848 882 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 OR1D5P58170 312 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SNAP25P60880 206 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 PSME3P61289 254 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ASIC1P78348 528 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 HTD2P86397 168 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 IFITM3Q01628 133 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 MYL5Q02045 173 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 CNTN2Q02246 1040 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 LRRC63Q05C16 580 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 KLRC3Q07444 240 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 BNIP2Q12982 314 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 CHIT1Q13231 466 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TNK1Q13470 666 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 HTR4Q13639 388 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 DDX39BQ13838 428 aaKnown RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TFDP2Q14188 446 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 PIGHQ14442 188 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 KCNJ11Q14654 390 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SMCO1Q147U7 214 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 EMC2Q15006 297 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF146Q15072 292 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 PDK1Q15118 436 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TRIP10Q15642 601 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ZNHIT3Q15649 155 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 MAPK11Q15759 364 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 GRK1Q15835 563 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 UPP1Q16831 310 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TYSND1Q2T9J0 566 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 C15orf32Q32M92 178 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TWISTNBQ3B726 338 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 HSDL1Q3SXM5 330 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ZBED5Q49AG3 693 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 GPAT3Q53EU6 434 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 KLHL12Q53G59 568 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 LDLRAP1Q5SW96 308 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 LIPJQ5W064 366 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SEL1L3Q68CR1 1132 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 OR5M10Q6IEU7 315 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 FAM166AQ6J272 317 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 CGB2Q6NT52 195 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ZFP1Q6P2D0 407 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TTC33Q6PID6 262 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SPESP1Q6UW49 350 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 DHRS11Q6UWP2 260 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 VITQ6UXI7 678 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 PLEKHG7Q6ZR37 379 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TPGS1Q6ZTW0 290 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TMEM26Q6ZUK4 368 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF767PQ75MW2 155 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TRMT10CQ7L0Y3 403 aaKnown RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 DCXRQ7Z4W1 244 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ABI3BPQ7Z7G0 1075 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 LHFPL4Q7Z7J7 247 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 DHDDSQ86SQ9 333 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 NT5DC3Q86UY8 548 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 COMMD7Q86VX2 200 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ANKRD46Q86W74 232 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 HORMAD1Q86X24 394 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TBC1D10CQ8IV04 446 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 NAXDQ8IW45 347 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 FAM219AQ8IW50 185 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 OFCC1Q8IZS5 231 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 CENPLQ8N0S6 344 aaPredicted RBP1.74□□□□□ -2.13
HMGB1-208ENST00000490788 SIX6OS1Q8N1H7 587 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 THEM5Q8N1Q8 247 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 LRRC18Q8N456 261 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 TRAM1L1Q8N609 369 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF781Q8N8C0 355 aa1.74□□□□□ -2.13
HMGB1-208ENST00000490788 NECAB1Q8N987 351 aa1.74□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms