RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	CH25H	O95992	272 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	MT-ND1	P03886	318 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	SAG	P10523	405 aa	Predicted RBP	7.72	□□□□□ -1.17
USP4-213	ENST00000488520	IFI30	P13284	250 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	FUT1	P19526	365 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	CBL	P22681	906 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	KIR2DL2	P43627	348 aa	Predicted RBP	7.72	□□□□□ -1.17
USP4-213	ENST00000488520	TPD52	P55327	224 aa	Predicted RBP	7.72	□□□□□ -1.17
USP4-213	ENST00000488520	RASGEF1B	Q0VAM2	473 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	C1D	Q13901	141 aa	Known RBP	7.72	□□□□□ -1.17
USP4-213	ENST00000488520	DGCR6	Q14129	220 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	PON3	Q15166	354 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	RNPS1	Q15287	305 aa	Known RBP	7.72	□□□□□ -1.17
USP4-213	ENST00000488520	TMEM201	Q5SNT2	666 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	MBOAT2	Q6ZWT7	520 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	H1FNT	Q75WM6	255 aa	Predicted RBP	7.72	□□□□□ -1.17
USP4-213	ENST00000488520	FCRLA	Q7L513	359 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	ADGRG5	Q8IZF4	528 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	OFCC1	Q8IZS5	231 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	MFSD4A	Q8N468	514 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	OR6S1	Q8NH40	331 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	TMEM255B	Q8WV15	326 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	GATAD2B	Q8WXI9	593 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	ROBO4	Q8WZ75	1007 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	TAAR8	Q969N4	342 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	KTI12	Q96EK9	354 aa	Predicted RBP	7.72	□□□□□ -1.17
USP4-213	ENST00000488520	ARL5B	Q96KC2	179 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	TACO1	Q9BSH4	297 aa	Known RBP	7.72	□□□□□ -1.17
USP4-213	ENST00000488520	CXorf56	Q9H5V9	222 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	ZNF556	Q9HAH1	456 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	YAE1D1	Q9NRH1	226 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	GLRX2	Q9NS18	164 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	ARMC1	Q9NVT9	282 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	ELOVL5	Q9NYP7	299 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	DNAJB9	Q9UBS3	223 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	SAMHD1	Q9Y3Z3	626 aa	Known RBP	7.72	□□□□□ -1.17
USP4-213	ENST00000488520	ZNF175	Q9Y473	711 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	CORIN	Q9Y5Q5	1042 aa		7.72	□□□□□ -1.17
USP4-213	ENST00000488520	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	7.71	□□□□□ -1.18
USP4-213	ENST00000488520	ZC3H12D	A2A288	527 aa	Known RBP	7.71	□□□□□ -1.18
USP4-213	ENST00000488520	LIPT2	A6NK58	231 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	EFCAB9	A8MZ26	197 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	ANKRD65	E5RJM6	399 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	BLOC1S5-TXNDC5	H3BN57	136 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	GPR171	O14626	319 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	KLF4	O43474	513 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	TIPRL	O75663	272 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	AKR7A3	O95154	331 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	SEMG1	P04279	462 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	CRH	P06850	196 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	THBD	P07204	575 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	AHCY	P23526	432 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	PRKCD	Q05655	676 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	CCNI	Q14094	377 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	CLEC12B	Q2HXU8	276 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	OTUD3	Q5T2D3	398 aa	Predicted RBP	7.71	□□□□□ -1.18
USP4-213	ENST00000488520	PODNL1	Q6PEZ8	512 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	ZNF704	Q6ZNC4	412 aa	Predicted RBP	7.71	□□□□□ -1.18
USP4-213	ENST00000488520	OAF	Q86UD1	273 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	GPAT4	Q86UL3	456 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	GGN	Q86UU5	652 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	PAPD5	Q8NDF8	572 aa	Known RBP	7.71	□□□□□ -1.18
USP4-213	ENST00000488520	GNPDA2	Q8TDQ7	276 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	IGFBPL1	Q8WX77	278 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	PYDC1	Q8WXC3	89 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	ZNF524	Q96C55	264 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	BPIFA2	Q96DR5	249 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	DENND2D	Q9H6A0	471 aa	Predicted RBP	7.71	□□□□□ -1.18
USP4-213	ENST00000488520	FANCF	Q9NPI8	374 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	MBNL3	Q9NUK0	354 aa	Known RBP	7.71	□□□□□ -1.18
USP4-213	ENST00000488520	PARPBP	Q9NWS1	579 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	EMC3	Q9P0I2	261 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	KLHL9	Q9P2J3	617 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	ZNF229	Q9UJW7	825 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	LAMP3	Q9UQV4	416 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	RASD1	Q9Y272	281 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520	EMC9	Q9Y3B6	208 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520		U3KQV3	271 aa		7.71	□□□□□ -1.18
USP4-213	ENST00000488520		A0A087WUU8	490 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	IGHV3-15	A0A0B4J1V0	119 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	ZNF726	A6NNF4	738 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	7.7	□□□□□ -1.18
USP4-213	ENST00000488520		G3V2T6	193 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	FFAR1	O14842	300 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	RNF13	O43567	381 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	OR7A10	O76100	309 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	CGA	P01215	116 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	IGF2	P01344	180 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	IFNA2	P01563	188 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	THY1	P04216	161 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	TP53	P04637	393 aa	Predicted RBP	7.7	□□□□□ -1.18
USP4-213	ENST00000488520	YES1	P07947	543 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	RNASE1	P07998	156 aa	Known RBP	7.7	□□□□□ -1.18
USP4-213	ENST00000488520	ADORA3	P0DMS8	318 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	IMPDH2	P12268	514 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	ZNF43	P17038	809 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	PTN	P21246	168 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	SHC1	P29353	583 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	GRPR	P30550	384 aa		7.7	□□□□□ -1.18
USP4-213	ENST00000488520	MAGEA2	P43356	314 aa		7.7	□□□□□ -1.18

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms