RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 CCDC80Q76M96 950 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 TMEM123Q8N131 208 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 YY1AP1Q9H869 796 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 FANCIQ9NVI1 1328 aa1.31□□□□□ -2.2
VPS50-216ENST00000484954 ZNF850A8MQ14 1090 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 C17orf51A8MQB3 221 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 PRRG1O14668 218 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 MAPK13O15264 365 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 CLDN3O15551 220 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 IFNB1P01574 187 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 BCHEP06276 602 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 NCF1P14598 390 aaPredicted RBP1.3□□□□□ -2.2
VPS50-216ENST00000484954 DRD5P21918 477 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 IL12AP29459 219 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 MDH1P40925 334 aaKnown RBP1.3□□□□□ -2.2
VPS50-216ENST00000484954 ACAA2P42765 397 aaKnown RBP1.3□□□□□ -2.2
VPS50-216ENST00000484954 CCR8P51685 355 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 KLRB1Q12918 225 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 SRSF5Q13243 272 aaKnown RBP1.3□□□□□ -2.2
VPS50-216ENST00000484954 PON3Q15166 354 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 IRF4Q15306 451 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 PHYHD1Q5SRE7 291 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 DNAJC24Q6P3W2 148 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 CEMP1Q6PRD7 247 aaPredicted RBP1.3□□□□□ -2.2
VPS50-216ENST00000484954 H2AFVQ71UI9 128 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 ZSCAN30Q86W11 494 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 MREGQ8N565 214 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 GPATCH11Q8N954 259 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 SDR42E1Q8WUS8 393 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 MAIP1Q8WWC4 291 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 UBE2E3Q969T4 207 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 TGM7Q96PF1 710 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 GPA33Q99795 319 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 LINC00597Q9H2U6 94 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 LRRN3Q9H3W5 708 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 NHEJ1Q9H9Q4 299 aaPredicted RBP1.3□□□□□ -2.2
VPS50-216ENST00000484954 LIN28AQ9H9Z2 209 aaKnown RBP1.3□□□□□ -2.2
VPS50-216ENST00000484954 HPF1Q9NWY4 346 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 HOOK1Q9UJC3 728 aaKnown RBP1.3□□□□□ -2.2
VPS50-216ENST00000484954 TMCO1Q9UM00 188 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 AURKCQ9UQB9 309 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 KCNIP3Q9Y2W7 256 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 SIGLEC9Q9Y336 463 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 UBIAD1Q9Y5Z9 338 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 ATP8B3O60423 1300 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 MSH6P52701 1360 aa1.3□□□□□ -2.2
VPS50-216ENST00000484954 OR5B21A6NL26 309 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 K7EPI3 171 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 XPO1O14980 1071 aaKnown RBP1.29□□□□□ -2.2
VPS50-216ENST00000484954 RAMP3O60896 148 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 SMPD2O60906 423 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 UPK3AO75631 287 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 GABARAPO95166 117 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 SLC25A14O95258 325 aaPredicted RBP1.29□□□□□ -2.2
VPS50-216ENST00000484954 P0C880 135 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 GNA11P29992 359 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 GPR6P46095 362 aaPredicted RBP1.29□□□□□ -2.2
VPS50-216ENST00000484954 SLC11A1P49279 550 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 RGS4P49798 205 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 CRYBB1P53674 252 aaPredicted RBP1.29□□□□□ -2.2
VPS50-216ENST00000484954 SUB1P53999 127 aaKnown RBP eCLIP1.29□□□□□ -2.2
VPS50-216ENST00000484954 SCRN3Q0VDG4 424 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 RIPPLY2Q5TAB7 128 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 PLA2G4DQ86XP0 818 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 ECHDC2Q86YB7 292 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 MIR7-3HGQ8N6C7 128 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 SYT14Q8NB59 555 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 MED8Q96G25 268 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 RNF157Q96PX1 679 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 TIMM29Q9BSF4 260 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 COQ10BQ9H8M1 238 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 HMG20AQ9NP66 347 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 ADAP2Q9NPF8 381 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 GPATCH2LQ9NWQ4 482 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 KIAA1257Q9ULG3 409 aa1.29□□□□□ -2.2
VPS50-216ENST00000484954 IGHV3-74A0A0B4J1X5 117 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 A0A1B0GWJ7 208 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 BICDL2A1A5D9 508 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 ZNF726A6NNF4 738 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 A8MUI8 341 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 LGALS9O00182 355 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 PRKAB2O43741 272 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 RP2O75695 350 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 B3GALNT1O75752 331 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 CCNE2O96020 404 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 IL4P05112 153 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 CCDC130P13994 396 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 NAMPTP43490 491 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 RFX3P48380 749 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 CX3CR1P49238 355 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 ERVK-25P63136 954 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 ZNF616Q08AN1 781 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 NCBP1Q09161 790 aaKnown RBP1.28□□□□□ -2.2
VPS50-216ENST00000484954 GINS1Q14691 196 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 GANABQ14697 944 aaKnown RBP1.28□□□□□ -2.2
VPS50-216ENST00000484954 INAQ16352 499 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 TAF9Q16594 264 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 FAM78AQ5JUQ0 283 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 SAXO2Q658L1 398 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 PRMT9Q6P2P2 845 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms