RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 SNTB1Q13884 538 aaKnown RBP12.11□□□□□ -0.47
USP40-214ENST00000483519 LIN54Q6MZP7 749 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 SPRED2Q7Z698 418 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 SPAG16Q8N0X2 631 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 ARMC10Q8N2F6 343 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 CCDC74AQ96AQ1 378 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 CHST6Q9GZX3 395 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 PRDM9Q9NQV7 894 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 TNFSF18Q9UNG2 199 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 KCNK6Q9Y257 313 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 SLC27A6Q9Y2P4 619 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 PLEKHM1Q9Y4G2 1056 aa12.11□□□□□ -0.47
USP40-214ENST00000483519 PQLC2LA1A4F0 135 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 TMEM218A2RU14 115 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 C1QTNF3-AMACRE9PGA6 284 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 ARPC3O15145 178 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 SLC35G6P0C7Q6 338 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 OR8G3PP0DMU2 310 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 SLC25A4P12235 298 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 GUCA2AQ02747 115 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 FGL2Q14314 439 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 ISXQ2M1V0 245 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 YOD1Q5VVQ6 348 aaPredicted RBP12.1□□□□□ -0.47
USP40-214ENST00000483519 C12orf40Q86WS4 652 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 OR5M8Q8NGP6 311 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 RNF166Q96A37 237 aaPredicted RBP12.1□□□□□ -0.47
USP40-214ENST00000483519 VRK1Q99986 396 aaPredicted RBP12.1□□□□□ -0.47
USP40-214ENST00000483519 SLC25A21Q9BQT8 299 aaPredicted RBP12.1□□□□□ -0.47
USP40-214ENST00000483519 ALG12Q9BV10 488 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 ZNF337Q9Y3M9 751 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 DENND4AQ7Z401 1863 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 TRAV18A0A075B6X5 111 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 IGLON5A6NGN9 336 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 OR52A4PA6NMU1 304 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 PRSS44E7EML9 344 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 H0YC42 278 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 GPR31O00270 319 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 LATO43561 262 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 B3GALT2O43825 422 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 CDC40O60508 579 aaKnown RBP eCLIP12.1□□□□□ -0.47
USP40-214ENST00000483519 SRPX2O60687 465 aaPredicted RBP12.1□□□□□ -0.47
USP40-214ENST00000483519 SCGB1D2O95969 90 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 APOC1P02654 83 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 CTHP32929 405 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 GABRA3P34903 492 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 TAS2R19P59542 299 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 PLA2G7Q13093 441 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 C11orf87Q6NUJ2 197 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 ULK3Q6PHR2 472 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 ENPP7Q6UWV6 458 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 PGAP1Q75T13 922 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 VN1R4Q7Z5H5 301 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 PUSL1Q8N0Z8 303 aaKnown RBP12.1□□□□□ -0.47
USP40-214ENST00000483519 CLEC1AQ8NC01 280 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 OR8S1Q8NH09 359 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 NT5CQ8TCD5 201 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 Q96M85 177 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 TIMM29Q9BSF4 260 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 TEX101Q9BY14 249 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 COMMD4Q9H0A8 199 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 COA4Q9NYJ1 87 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 FRRS1LQ9P0K9 344 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 OR1A2Q9Y585 309 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 EPOPA6NHQ4 379 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 LRRC72A6NJI9 287 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 PRR32B1ATL7 298 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 KCNJ13O60928 360 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 UPK3AO75631 287 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 GPR143P51810 404 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 UBE2IP63279 158 aaKnown RBP12.1□□□□□ -0.47
USP40-214ENST00000483519 LIPNQ5VXI9 398 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 TMEM88Q6PEY1 159 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 SLC16A9Q7RTY1 509 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 DEFB123Q8N688 67 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 MRPL43Q8N983 215 aaKnown RBP12.1□□□□□ -0.47
USP40-214ENST00000483519 CDCA3Q99618 268 aaPredicted RBP12.1□□□□□ -0.47
USP40-214ENST00000483519 PDCD10Q9BUL8 212 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 HDAC8Q9BY41 377 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 GAREM1Q9H706 876 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 MYOZ1Q9NP98 299 aaPredicted RBP12.1□□□□□ -0.47
USP40-214ENST00000483519 PCDHB10Q9UN67 800 aa12.1□□□□□ -0.47
USP40-214ENST00000483519 SNRNP200O75643 2136 aaKnown RBP12.09□□□□□ -0.47
USP40-214ENST00000483519 TRAV8-7A0A075B6U6 113 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 MEIS3P1A6NDR6 274 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 ADH1CP00326 375 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 HNRNPA1P09651 372 aaKnown RBP eCLIP12.09□□□□□ -0.47
USP40-214ENST00000483519 CSRP1P21291 193 aaKnown RBP12.09□□□□□ -0.47
USP40-214ENST00000483519 ACAA2P42765 397 aaKnown RBP12.09□□□□□ -0.47
USP40-214ENST00000483519 ID2Q02363 134 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 SRSF4Q08170 494 aaKnown RBP12.09□□□□□ -0.47
USP40-214ENST00000483519 MICBQ29980 383 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 TCEAL5Q5H9L2 206 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 NKAIN2Q5VXU1 208 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 LINC00114Q6XXX2 140 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 ACOT7LQ6ZUV0 252 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 TMED4Q7Z7H5 227 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 LDLRAD3Q86YD5 345 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 GABRG1Q8N1C3 465 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 OR1M1Q8NGA1 313 aa12.09□□□□□ -0.47
USP40-214ENST00000483519 ZCCHC10Q8TBK6 192 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms