RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 TIGARQ9NQ88 270 aa7.33□□□□□ -1.24
USP4-210ENST00000483212 ASB6Q9NWX5 421 aa7.33□□□□□ -1.24
USP4-210ENST00000483212 CLCF1Q9UBD9 225 aa7.33□□□□□ -1.24
USP4-210ENST00000483212 CAMK2AQ9UQM7 478 aa7.33□□□□□ -1.24
USP4-210ENST00000483212 ZNF175Q9Y473 711 aa7.33□□□□□ -1.24
USP4-210ENST00000483212 USP24Q9UPU5 2620 aa7.33□□□□□ -1.24
USP4-210ENST00000483212 ZNF407Q9C0G0 2248 aa7.33□□□□□ -1.24
USP4-210ENST00000483212 PIEZO2Q9H5I5 2752 aa7.33□□□□□ -1.24
USP4-210ENST00000483212 IGKV1D-43A0A0B4J1Z2 117 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 SLC35F4A4IF30 521 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 EIF4E1BA6NMX2 242 aaKnown RBP7.32□□□□□ -1.24
USP4-210ENST00000483212 CENPBD1B2RD01 187 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 NPIPA2E9PIF3 369 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 NPIPA3F8WFD2 350 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 J3QRE1 110 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 ERVH48-1M5A8F1 160 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 AHCYL1O43865 530 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 FAM20BO75063 409 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 TGM6O95932 706 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 GYPBP06028 91 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 CTLA4P16410 223 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 ZNF43P17038 809 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 GSTT1P30711 240 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 PTGS2P35354 604 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 ZNF133P52736 654 aaPredicted RBP7.32□□□□□ -1.24
USP4-210ENST00000483212 CLDN17P56750 224 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 PIGFQ07326 219 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 KLRB1Q12918 225 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 TMED1Q13445 227 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 C1DQ13901 141 aaKnown RBP7.32□□□□□ -1.24
USP4-210ENST00000483212 GGTLC2Q14390 218 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 IRF3Q14653 427 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 GUSBP1Q15486 140 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 ACSF3Q4G176 576 aaPredicted RBP7.32□□□□□ -1.24
USP4-210ENST00000483212 KRTCAP3Q53RY4 240 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 SLC35D3Q5M8T2 416 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 EEF1A1P5Q5VTE0 462 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 ZNF773Q6PK81 442 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 B3GLCTQ6Y288 498 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 GID4Q8IVV7 300 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 PM20D2Q8IYS1 436 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 GHDCQ8N2G8 530 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 CISD2Q8N5K1 135 aaKnown RBP7.32□□□□□ -1.24
USP4-210ENST00000483212 NOXO1Q8NFA2 376 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 TMEM54Q969K7 222 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 TMEM45BQ96B21 275 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 LGALS12Q96DT0 336 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 SLC25A44Q96H78 314 aaPredicted RBP7.32□□□□□ -1.24
USP4-210ENST00000483212 ADAD1Q96M93 576 aaKnown RBP7.32□□□□□ -1.24
USP4-210ENST00000483212 TSSK2Q96PF2 358 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 TEAD3Q99594 435 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 ALG12Q9BV10 488 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 NUAK2Q9H093 628 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 SYT4Q9H2B2 425 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 BCO1Q9HAY6 547 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 FGF20Q9NP95 211 aaPredicted RBP7.32□□□□□ -1.24
USP4-210ENST00000483212 RPRD1BQ9NQG5 326 aaKnown RBP7.32□□□□□ -1.24
USP4-210ENST00000483212 HAO2Q9NYQ3 351 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 CNOT2Q9NZN8 540 aaKnown RBP7.32□□□□□ -1.24
USP4-210ENST00000483212 ERVK-18Q9QC07 812 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 WARS2Q9UGM6 360 aaKnown RBP7.32□□□□□ -1.24
USP4-210ENST00000483212 FOXD3Q9UJU5 478 aaPredicted RBP7.32□□□□□ -1.24
USP4-210ENST00000483212 MCTS1Q9ULC4 181 aaKnown RBP7.32□□□□□ -1.24
USP4-210ENST00000483212 RCE1Q9Y256 329 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 EXOGQ9Y2C4 368 aaKnown RBP7.32□□□□□ -1.24
USP4-210ENST00000483212 TPRKBQ9Y3C4 175 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 RPL36Q9Y3U8 105 aaKnown RBP7.32□□□□□ -1.24
USP4-210ENST00000483212 FKBP7Q9Y680 259 aa7.32□□□□□ -1.24
USP4-210ENST00000483212 EFCAB10A6NFE3 127 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 SLC22A31A6NKX4 558 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 ZNF724A8MTY0 619 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 AHRRA9YTQ3 701 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 XKRYO14609 159 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 MRPS14O60783 128 aaKnown RBP7.31□□□□□ -1.24
USP4-210ENST00000483212 GLCEO94923 617 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 SYNGR4O95473 234 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 RENP00797 406 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 IGHG1P01857 330 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 IGHA1P01876 353 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 TFP02787 698 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 CDK1P06493 297 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 STSP08842 583 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 PAICSP22234 425 aaKnown RBP7.31□□□□□ -1.24
USP4-210ENST00000483212 EDNRAP25101 427 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 PYCR1P32322 319 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 MTNR1AP48039 350 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 SELENOPP49908 381 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 FMODQ06828 376 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 RASGEF1BQ0VAM2 473 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 RAB40BQ12829 278 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 CAMK2DQ13557 499 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 DOC2BQ14184 412 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 ETFDHQ16134 617 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 PHYHD1Q5SRE7 291 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 RTL6Q6ICC9 239 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 SLC25A47Q6Q0C1 308 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 LYPD4Q6UWN0 246 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 SEM1Q6ZVN7 128 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 AHSA2Q719I0 299 aa7.31□□□□□ -1.24
USP4-210ENST00000483212 HDDC2Q7Z4H3 204 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms