RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 RPS15AP62244 130 aaKnown RBP12.41□□□□□ -0.42
USP42-206ENST00000479544 CLINT1Q14677 625 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 RHEBQ15382 184 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 FAM26DQ5JW98 314 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 CDH26Q8IXH8 852 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 OR5H2Q8NGV7 314 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 PPP1R1CQ8WVI7 109 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 KCNK15Q9H427 330 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 CA10Q9NS85 328 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 IL20Q9NYY1 176 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 GMEB2Q9UKD1 530 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 LINC00862A6NCI5 91 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 H3BML4 177 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 CRTAPO75718 401 aaPredicted RBP12.41□□□□□ -0.42
USP42-206ENST00000479544 F12P00748 615 aaPredicted RBP12.41□□□□□ -0.42
USP42-206ENST00000479544 HNRNPA1L2Q32P51 320 aaKnown RBP12.41□□□□□ -0.42
USP42-206ENST00000479544 TMEM201Q5SNT2 666 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 AADACL4Q5VUY2 407 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 MUC20Q8N307 709 aaPredicted RBP12.41□□□□□ -0.42
USP42-206ENST00000479544 IL17RCQ8NAC3 791 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 OR4S1Q8NGB4 309 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 SMIM19Q96E16 107 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 CMSS1Q9BQ75 279 aaKnown RBP12.41□□□□□ -0.42
USP42-206ENST00000479544 TAS2R5Q9NYW4 299 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 GPR160Q9UJ42 338 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 SHISA3A0PJX4 238 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 ZNF850A8MQ14 1090 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 MAN2B1O00754 1011 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 GPR85P60893 370 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 MAT1AQ00266 395 aaKnown RBP12.4□□□□□ -0.42
USP42-206ENST00000479544 TSEN54Q7Z6J9 526 aaKnown RBP12.4□□□□□ -0.42
USP42-206ENST00000479544 LINC00346Q8IVM7 164 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 WDSUB1Q8N9V3 476 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 SFXN5Q8TD22 340 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 PELI1Q96FA3 418 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 LYSMD1Q96S90 227 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 ISYNA1Q9NPH2 558 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 COPS7AQ9UBW8 275 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 SLC22A13Q9Y226 551 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 FAM96BQ9Y3D0 163 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 DOCK1Q14185 1865 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.4□□□□□ -0.42
USP42-206ENST00000479544 EFCAB7A8K855 629 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 SYT7O43581 403 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 APBB3O95704 486 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 PMP2P02689 132 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 ENPP1P22413 925 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 CST5P28325 142 aaPredicted RBP12.4□□□□□ -0.42
USP42-206ENST00000479544 ALKBH1Q13686 389 aaKnown RBP12.4□□□□□ -0.42
USP42-206ENST00000479544 CST6Q15828 149 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 PLA1AQ53H76 456 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 GOT1L1Q8NHS2 421 aaPredicted RBP12.4□□□□□ -0.42
USP42-206ENST00000479544 STK35Q8TDR2 534 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 MS4A6EQ96DS6 147 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 SCGB3A2Q96PL1 93 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 SORCS2Q96PQ0 1159 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 SLC22A11Q9NSA0 550 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 FBXO34Q9NWN3 711 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 KIF25Q9UIL4 384 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 GPR34Q9UPC5 381 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 LSM2Q9Y333 95 aaKnown RBP12.4□□□□□ -0.42
USP42-206ENST00000479544 PRELID3BQ9Y3B1 194 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 BORCS7-ASMTA0A0B4J1R7 106 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 AIPO00170 330 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 DPM1O60762 260 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 MPC2O95563 127 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 OMGP23515 440 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 ARHGAP19Q14CB8 494 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 LAMTOR1Q6IAA8 161 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 MARCH3Q86UD3 253 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 SMARCD2Q92925 531 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 SLC41A2Q96JW4 573 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 SLC17A9Q9BYT1 436 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 PCDHB10Q9UN67 800 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 DOCK3Q8IZD9 2030 aa12.4□□□□□ -0.42
USP42-206ENST00000479544 TMEM269A0A1B0GVZ9 245 aa12.4□□□□□ -0.43
USP42-206ENST00000479544 TMEM200CA6NKL6 621 aa12.4□□□□□ -0.43
USP42-206ENST00000479544 H7C417 338 aa12.4□□□□□ -0.43
USP42-206ENST00000479544 PET100P0DJ07 73 aa12.4□□□□□ -0.43
USP42-206ENST00000479544 TBXA2RP21731 343 aa12.4□□□□□ -0.43
USP42-206ENST00000479544 SNRPEP62304 92 aaKnown RBP12.4□□□□□ -0.43
USP42-206ENST00000479544 REEP5Q00765 189 aa12.4□□□□□ -0.43
USP42-206ENST00000479544 DEFA6Q01524 100 aa12.4□□□□□ -0.43
USP42-206ENST00000479544 RASGEF1BQ0VAM2 473 aa12.4□□□□□ -0.43
USP42-206ENST00000479544 EIF4EBP2Q13542 120 aaPredicted RBP12.4□□□□□ -0.43
USP42-206ENST00000479544 SGCAQ16586 387 aa12.4□□□□□ -0.43
USP42-206ENST00000479544 SHISA6Q6ZSJ9 500 aa12.4□□□□□ -0.43
USP42-206ENST00000479544 SCMH1Q96GD3 660 aa12.4□□□□□ -0.43
USP42-206ENST00000479544 G6PC3Q9BUM1 346 aa12.4□□□□□ -0.43
USP42-206ENST00000479544 FAM86C1Q9NVL1 165 aa12.4□□□□□ -0.43
USP42-206ENST00000479544 ZNF175Q9Y473 711 aa12.4□□□□□ -0.43
USP42-206ENST00000479544 SHOXO15266 292 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 CSF2RBP32927 897 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 PRPS1P60891 318 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 ACY1Q03154 408 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 GLDNQ6ZMI3 551 aaPredicted RBP12.39□□□□□ -0.43
USP42-206ENST00000479544 ZNF793Q6ZN11 406 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 KCNRGQ8N5I3 272 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 HSD17B11Q8NBQ5 300 aa12.39□□□□□ -0.43
USP42-206ENST00000479544 NUDCD2Q8WVJ2 157 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms