RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 BOD1Q96IK1 185 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 ADAD1Q96M93 576 aaKnown RBP5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 HS6ST2Q96MM7 605 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 ANKRD27Q96NW4 1050 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 OXGR1Q96P68 337 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 ALKBH3Q96Q83 286 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 LRRC37BQ96QE4 947 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 EPYCQ99645 322 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 CGREF1Q99674 301 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 DHRS9Q9BPW9 319 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 TRAF4Q9BUZ4 470 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 C1QTNF6Q9BXI9 259 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 LINC00470Q9BZP3 86 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 FKRPQ9H9S5 495 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 TMEM27Q9HBJ8 222 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 OBP2BQ9NPH6 170 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 MRGBPQ9NV56 204 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 RCE1Q9Y256 329 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 B3GALT5Q9Y2C3 310 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 ARFGEF3Q5TH69 2177 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 ALPK2Q86TB3 2170 aa5.94□□□□□ -1.46
CCDC88A-213ENST00000476903 CHD3Q12873 2000 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 IGKV1D-42A0A075B6H8 117 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 TRAV36DV7A0A075B6V5 113 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 A0A087WUJ7 227 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 A0A0B4J2E0 115 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 A0A1B0GX12 115 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 ANKRD34BA5PLL1 514 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 E7EQL1 145 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 UPK3AO75631 287 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 MFN2O95140 757 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 CD8AP01732 235 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 TROVE2P10155 538 aaKnown RBP eCLIP5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 TTKP33981 857 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 FABP6P51161 128 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 SH3BGRP55822 239 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 CLDN17P56750 224 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 MTPNP58546 118 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 UBE2NP61088 152 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC25A3Q00325 362 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 IL1RL1Q01638 556 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 ROR2Q01974 943 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 DMTNQ08495 405 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 TNK1Q13470 666 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 C1DQ13901 141 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 MFSD13AQ14CX5 517 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 OR1Q1Q15612 314 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 STEAP3Q658P3 488 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 HMBOX1Q6NT76 420 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 ZNF544Q6NX49 715 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 H1FNTQ75WM6 255 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 PTOV1Q86YD1 416 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 EPHX4Q8IUS5 362 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 MUC15Q8N387 334 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 CELF2-AS1Q8N7Q2 184 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 DTX3Q8N9I9 347 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 ADPRHL1Q8NDY3 354 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 BVESQ8NE79 360 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 OR1K1Q8NGR3 316 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 OR6S1Q8NH40 331 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 TAAR8Q969N4 342 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 ZNF317Q96PQ6 595 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 KCNS3Q9BQ31 491 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 RSPO3Q9BXY4 272 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 MOV10Q9HCE1 1003 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 CBLN4Q9NTU7 201 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 ATP23Q9Y6H3 246 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 NSD1Q96L73 2696 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 TLN2Q9Y4G6 2542 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 CSPG4Q6UVK1 2322 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 YLPM1P49750 1951 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 ZANQ9Y493 2812 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 HIVEP2P31629 2446 aa5.93□□□□□ -1.46
CCDC88A-213ENST00000476903 ABCA1O95477 2261 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 ARPC4-TTLL3A0A0A6YYG9 625 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 LOC102725191A0A1B0GVB3 256 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 RPL36A-HNRNPH2H7BZ11 118 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 M0QX08 132 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 M0R3H8 397 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 FMO6PO60774 539 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC43A1O75387 559 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 ZNF432O94892 652 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 LGI1O95970 557 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 IGHV4-39P01824 125 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 VIMP08670 466 aaKnown RBP5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 NQO1P15559 274 aaKnown RBP5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 CBLP22681 906 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 GRPRP30550 384 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 PCGF2P35227 344 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 ACVR1BP36896 505 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 NUDT6P53370 316 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 CDH12P55289 794 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 PPP2R2BQ00005 443 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 LGALS3BPQ08380 585 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 CYLC2Q14093 348 aaPredicted RBP5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 SELPLGQ14242 412 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 TRMT5Q32P41 509 aaKnown RBP5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 C3orf36Q3SXR2 165 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 TBRG1Q3YBR2 411 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 HIKESHIQ53FT3 197 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms