RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 GLO1Q04760 184 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 PIGFQ07326 219 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 CEACAM7Q14002 265 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 LASP1Q14847 261 aaKnown RBP6.63□□□□□ -1.35
USP54-211ENST00000474929 OR7A5Q15622 319 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 ZNF141Q15928 474 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 C11orf91Q3C1V1 193 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 NHLRC1Q6VVB1 395 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 ZNF551Q7Z340 670 aaPredicted RBP6.63□□□□□ -1.35
USP54-211ENST00000474929 C1orf87Q8N0U7 546 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 ICA1LQ8NDH6 482 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 FAM71CQ8NEG0 241 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 GEMIN6Q8WXD5 167 aaKnown RBP6.63□□□□□ -1.35
USP54-211ENST00000474929 ZNF524Q96C55 264 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 MECRQ9BV79 373 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 EBPLQ9BY08 206 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 ZCCHC3Q9NUD5 404 aaKnown RBP6.63□□□□□ -1.35
USP54-211ENST00000474929 TBCCD1Q9NVR7 557 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 CPSF2Q9P2I0 782 aaKnown RBP6.63□□□□□ -1.35
USP54-211ENST00000474929 PPP1R3CQ9UQK1 317 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 POFUT2Q9Y2G5 429 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 STK38LQ9Y2H1 464 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 JRKLQ9Y4A0 524 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 LSM4Q9Y4Z0 139 aaKnown RBP6.63□□□□□ -1.35
USP54-211ENST00000474929 MAB21L2Q9Y586 359 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 TEX264Q9Y6I9 313 aa6.63□□□□□ -1.35
USP54-211ENST00000474929 ABCA13Q86UQ4 5058 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 FRAS1Q86XX4 4008 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 A0A096LPI6 279 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 ZSCAN5BA6NJL1 495 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 H0YHG0 523 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 PPP6CO00743 305 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 DNALI1O14645 258 aaPredicted RBP6.62□□□□□ -1.35
USP54-211ENST00000474929 SLC25A17O43808 307 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 SCN2BO60939 215 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 BANF1O75531 89 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 FARS2O95363 451 aaKnown RBP6.62□□□□□ -1.35
USP54-211ENST00000474929 OPN1SWP03999 348 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 HMGN2P05204 90 aaKnown RBP6.62□□□□□ -1.35
USP54-211ENST00000474929 EEF1B2P24534 225 aaKnown RBP6.62□□□□□ -1.35
USP54-211ENST00000474929 CRATP43155 626 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 CLDN17P56750 224 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 COX10Q12887 443 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 TP53BP2Q13625 1128 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 RAB39AQ14964 217 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 RASA2Q15283 850 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 EMBQ6PCB8 327 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 LHFPL2Q6ZUX7 228 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 EPHX4Q8IUS5 362 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 IGDCC3Q8IVU1 814 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 ARFGAP2Q8N6H7 521 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 PTGR2Q8N8N7 351 aaPredicted RBP6.62□□□□□ -1.35
USP54-211ENST00000474929 OR56A1Q8NGH5 318 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 OR1J1Q8NGS3 322 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 C8orf46Q8TAG6 207 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 LHX4Q969G2 390 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 MAGOHBQ96A72 148 aaKnown RBP6.62□□□□□ -1.35
USP54-211ENST00000474929 PBKQ96KB5 322 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 LRR1Q96L50 414 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 SIGLEC11Q96RL6 698 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 FOXB1Q99853 325 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 ACPTQ9BZG2 426 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 EXD2Q9NVH0 621 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 ADPRHL2Q9NX46 363 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 PYCARDQ9ULZ3 195 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 SIGLEC9Q9Y336 463 aa6.62□□□□□ -1.35
USP54-211ENST00000474929 IQCMA0A1B0GVH7 501 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 A0A1B0GVI7 797 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 TMEM72A0PK05 275 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 PRAMEF27A3QJZ7 478 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 DUXAA6NLW8 204 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 LRRC30A6NM36 301 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 TMEM178BH3BS89 294 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 MANBAO00462 879 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 FAAHO00519 579 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 TBX19O60806 448 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 SMIM24O75264 130 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 STX11O75558 287 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 PROCP04070 461 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 THRBP10828 461 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 B4GALT1P15291 398 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 CCNA2P20248 432 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 HMOX2P30519 316 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 RYKP34925 604 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 GP2P55259 537 aaKnown RBP6.61□□□□□ -1.35
USP54-211ENST00000474929 ARL4CP56559 192 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 GNG11P61952 73 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 PLP2Q04941 152 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 DLG1Q12959 904 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 C1DQ13901 141 aaKnown RBP6.61□□□□□ -1.35
USP54-211ENST00000474929 PPP1R7Q15435 360 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 KCNJ8Q15842 424 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 MBNL2Q5VZF2 373 aaKnown RBP6.61□□□□□ -1.35
USP54-211ENST00000474929 WDR25Q64LD2 544 aaPredicted RBP6.61□□□□□ -1.35
USP54-211ENST00000474929 LETMD1Q6P1Q0 360 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 TMEM53Q6P2H8 277 aa6.61□□□□□ -1.35
USP54-211ENST00000474929 KCTD18Q6PI47 426 aaPredicted RBP6.61□□□□□ -1.35
USP54-211ENST00000474929 CCDC137Q6PK04 289 aaKnown RBP6.61□□□□□ -1.35
USP54-211ENST00000474929 METAP1DQ6UB28 335 aaPredicted RBP6.61□□□□□ -1.35
USP54-211ENST00000474929 DCDC5Q6ZRR9 648 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms