RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 OR52N1Q8NH53 320 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 RAB2BQ8WUD1 216 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 CPNE4Q96A23 557 aaPredicted RBP11.48□□□□□ -0.57
VPS13D-205ENST00000473099 ASB6Q9NWX5 421 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 B3GAT1Q9P2W7 334 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 CAB39Q9Y376 341 aaPredicted RBP11.48□□□□□ -0.57
VPS13D-205ENST00000473099 CEPT1Q9Y6K0 416 aa11.48□□□□□ -0.57
VPS13D-205ENST00000473099 FREM2Q5SZK8 3169 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 DAPL1A0PJW8 107 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 SLC22A23A1A5C7 686 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 FAM166BA8MTA8 275 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 C12orf71A8MTZ7 269 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 H3BSA7 217 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 EIF1AYO14602 144 aaKnown RBP11.47□□□□□ -0.57
VPS13D-205ENST00000473099 TNFSF11O14788 317 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 GYPBP06028 91 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 CLUP10909 449 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 IFNGR1P15260 489 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 ENPP1P22413 925 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 EIF2S3P41091 472 aaKnown RBP11.47□□□□□ -0.57
VPS13D-205ENST00000473099 ETV1P50549 477 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 MLLT11Q13015 90 aaPredicted RBP11.47□□□□□ -0.57
VPS13D-205ENST00000473099 FOXB2Q5VYV0 432 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 ANKRD13BQ86YJ7 626 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 ALDH16A1Q8IZ83 802 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 OR6K6Q8NGW6 343 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 OR6X1Q8NH79 312 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 ADGRG7Q96K78 797 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 KCNK17Q96T54 332 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 MGLLQ99685 303 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 DOK1Q99704 481 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 TSPAN10Q9H1Z9 355 aaPredicted RBP11.47□□□□□ -0.57
VPS13D-205ENST00000473099 SYT4Q9H2B2 425 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 ZDHHC11Q9H8X9 412 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 ADGRL4Q9HBW9 690 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 ERVK13-1Q9NX77 482 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 ZMIZ1Q9ULJ6 1067 aa11.47□□□□□ -0.57
VPS13D-205ENST00000473099 LSM2Q9Y333 95 aaKnown RBP11.47□□□□□ -0.57
VPS13D-205ENST00000473099 NCOA6Q14686 2063 aaPredicted RBP11.47□□□□□ -0.57
VPS13D-205ENST00000473099 ZNF726A6NNF4 738 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 NPIPA2E9PIF3 369 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 NPIPA3F8WFD2 350 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 MKRN2OSH3BPM6 223 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 PHYHO14832 338 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 TRAF3IP2O43734 574 aaPredicted RBP11.46□□□□□ -0.57
VPS13D-205ENST00000473099 IGHG1P01857 330 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 OPN1LWP04000 364 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 LIMS3P0CW19 117 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 LIMS4P0CW20 117 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 BIDP55957 195 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 ACTA2P62736 377 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 ACTG2P63267 376 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 BDH1Q02338 343 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 ACSM1Q08AH1 577 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 C19orf57Q0VDD7 668 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 GALEQ14376 348 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 MELKQ14680 651 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 INAQ16352 499 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 TIMM50Q3ZCQ8 353 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 ARMCX4Q5H9R4 360 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 THEM4Q5T1C6 240 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 LINC01590Q5TEZ4 76 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 GPR107Q5VW38 600 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 NHLRC1Q6VVB1 395 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 LRRC69Q6ZNQ3 347 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 SLC16A9Q7RTY1 509 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 GPAT4Q86UL3 456 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 P2RY8Q86VZ1 359 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 MED12LQ86YW9 2145 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 PM20D2Q8IYS1 436 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 KDM8Q8N371 416 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 OR10H4Q8NGA5 316 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 NEIL3Q8TAT5 605 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 ZPLD1Q8TCW7 415 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 HAVCR2Q8TDQ0 301 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 ZCCHC14Q8WYQ9 949 aaKnown RBP11.46□□□□□ -0.57
VPS13D-205ENST00000473099 PNPLA2Q96AD5 504 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 ISOC1Q96CN7 298 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 ZMYND19Q96E35 227 aaPredicted RBP11.46□□□□□ -0.57
VPS13D-205ENST00000473099 YIPF6Q96EC8 236 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 SLC25A44Q96H78 314 aaPredicted RBP11.46□□□□□ -0.57
VPS13D-205ENST00000473099 RBP7Q96R05 134 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 YIPF3Q9GZM5 350 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 MARCH7Q9H992 704 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 SRA1Q9HD15 236 aaKnown RBP11.46□□□□□ -0.57
VPS13D-205ENST00000473099 KLHL13Q9P2N7 655 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 B9D1Q9UPM9 204 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 TMEM14AQ9Y6G1 99 aa11.46□□□□□ -0.57
VPS13D-205ENST00000473099 TRGV5A0A0B4J1U4 118 aa11.45□□□□□ -0.58
VPS13D-205ENST00000473099 K7ENP7 123 aa11.45□□□□□ -0.58
VPS13D-205ENST00000473099 CCRL2O00421 344 aa11.45□□□□□ -0.58
VPS13D-205ENST00000473099 TFECO14948 347 aaPredicted RBP11.45□□□□□ -0.58
VPS13D-205ENST00000473099 APOL3O95236 402 aa11.45□□□□□ -0.58
VPS13D-205ENST00000473099 SCG5P05408 212 aa11.45□□□□□ -0.58
VPS13D-205ENST00000473099 HLA-DOBP13765 273 aa11.45□□□□□ -0.58
VPS13D-205ENST00000473099 ZNF708P17019 499 aa11.45□□□□□ -0.58
VPS13D-205ENST00000473099 ZNF24P17028 368 aa11.45□□□□□ -0.58
VPS13D-205ENST00000473099 RFC3P40938 356 aa11.45□□□□□ -0.58
VPS13D-205ENST00000473099 CD97P48960 835 aa11.45□□□□□ -0.58
VPS13D-205ENST00000473099 LHX2P50458 406 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms