RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CXCL3P19876 107 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 PGCP20142 388 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 TMEM255AQ5JRV8 349 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 GPR139Q6DWJ6 353 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 SFRP4Q6FHJ7 346 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-217ENST00000466159 OR5M10Q6IEU7 315 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 PWWP2BQ6NUJ5 590 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 SLC29A4Q7RTT9 530 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 NUP54Q7Z3B4 507 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 PLCZ1Q86YW0 608 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 PRSS35Q8N3Z0 413 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 OR8K3Q8NH51 312 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 METTL21AQ8WXB1 218 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 NSMAFQ92636 917 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 ATOH1Q92858 354 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-217ENST00000466159 KLHL15Q96M94 604 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 CMTM3Q96MX0 182 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 INTS14Q96SY0 518 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 GON7Q9BXV9 100 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 OR51J1Q9H342 316 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 SLCO1C1Q9NYB5 712 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 NKIRAS2Q9NYR9 191 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 KLK11Q9UBX7 282 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 ZNF222Q9UK12 451 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 RCE1Q9Y256 329 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 HSPB11Q9Y547 144 aa8.09□□□□□ -1.11
SYNE1-217ENST00000466159 COL5A1P20908 1838 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-217ENST00000466159 TMED7-TICAM2A0A0A6YYA0 188 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 TRBV5-5A0A0J9YX44 114 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 A0A1B0GX78 115 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 A0A1W2PQD3 144 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 ANKRD34BA5PLL1 514 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 CENPBD1B2RD01 187 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 H0YC42 278 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 XKRYO14609 159 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 TO15178 435 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 SUSD5O60279 629 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 CDC40O60508 579 aaKnown RBP eCLIP8.08□□□□□ -1.12
SYNE1-217ENST00000466159 EIF4E2O60573 245 aaKnown RBP8.08□□□□□ -1.12
SYNE1-217ENST00000466159 HLA-DQA2P01906 255 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 H2AFB2P0C5Z0 115 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 GP1BBP13224 206 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 STOMP27105 288 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 CENPAP49450 140 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 GALK2Q01415 458 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 DMWDQ09019 674 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 ETFDHQ16134 617 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 ACKR1Q16570 336 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 GSG1Q2KHT4 349 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 SLC35D2Q76EJ3 337 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 MAMDC2Q7Z304 686 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-217ENST00000466159 LRRTM1Q86UE6 522 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 ADGRG3Q86Y34 549 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 SDR16C5Q8N3Y7 309 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 ZNF676Q8N7Q3 588 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 DUSP19Q8WTR2 217 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 CCDC74AQ96AQ1 378 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 SLC41A2Q96JW4 573 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 NUDT22Q9BRQ3 303 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 OR11A1Q9GZK7 315 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 UBE2ZQ9H832 354 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-217ENST00000466159 FGF21Q9NSA1 209 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 FOXJ3Q9UPW0 622 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 TMED7Q9Y3B3 224 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 FREM3P0C091 2139 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 ASCC3Q8N3C0 2202 aaKnown RBP8.08□□□□□ -1.12
SYNE1-217ENST00000466159 WDFY3Q8IZQ1 3526 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 WDR87Q6ZQQ6 2873 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 C2orf72A6NCS6 295 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 ZNF593O00488 134 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-217ENST00000466159 TPD52L2O43399 206 aaKnown RBP8.08□□□□□ -1.12
SYNE1-217ENST00000466159 FADS1O60427 444 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 GIMD1P0DJR0 217 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 TMIGD3P0DMS9 266 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-217ENST00000466159 GLB1P16278 677 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 PTH2RP49190 550 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 PNLIPRP2P54317 469 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 PLA2G7Q13093 441 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 DYRK1AQ13627 763 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 CBFBQ13951 182 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 ST3GAL2Q16842 350 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 SLC22A10Q63ZE4 541 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 LRRN1Q6UXK5 716 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 BTN2A1Q7KYR7 527 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 TMPRSS12Q86WS5 348 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 OTOSQ8NHW6 89 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 GIMAP1Q8WWP7 306 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 TMEM106AQ96A25 262 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 DACT3Q96B18 629 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-217ENST00000466159 ZNF501Q96CX3 271 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-217ENST00000466159 S100A16Q96FQ6 103 aaKnown RBP8.08□□□□□ -1.12
SYNE1-217ENST00000466159 NDEL1Q9GZM8 345 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 SLITRK2Q9H156 845 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 COPZ2Q9P299 210 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 FLVCR2Q9UPI3 526 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 B9D1Q9UPM9 204 aa8.08□□□□□ -1.12
SYNE1-217ENST00000466159 PRSS37A4D1T9 235 aa8.07□□□□□ -1.12
SYNE1-217ENST00000466159 GABARAPH6UMI1 98 aa8.07□□□□□ -1.12
SYNE1-217ENST00000466159 SLC16A7O60669 478 aa8.07□□□□□ -1.12
SYNE1-217ENST00000466159 RAD1O60671 282 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms