RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PRICKLE1Q96MT3 831 aaPredicted RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 ZNF599Q96NL3 588 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 OR4F4Q96R69 305 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 ZNF300Q96RE9 604 aaPredicted RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 TSC22D3Q99576 134 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 OVOL2Q9BRP0 275 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 TMEM175Q9BSA9 504 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 RBM4Q9BWF3 364 aaKnown RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 GON7Q9BXV9 100 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 NT5DC2Q9H857 520 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 ELOVL3Q9HB03 270 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 IL1RAPQ9NPH3 570 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 MRPL40Q9NQ50 206 aaKnown RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 SPHK2Q9NRA0 654 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 DUS2Q9NX74 493 aaKnown RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 UTP6Q9NYH9 597 aaKnown RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 TAS2R16Q9NYV7 291 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 PURGQ9UJV8 347 aaKnown RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 PTBP2Q9UKA9 531 aaKnown RBP3.44□□□□□ -1.86
VPS29-202ENST00000447578 RNF6Q9Y252 685 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 BTRCQ9Y297 605 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 SPACA6W5XKT8 324 aa3.44□□□□□ -1.86
VPS29-202ENST00000447578 XKRY2A2RUG3 117 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 LRIT2A6NDA9 550 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 NCF1BA6NI72 391 aaPredicted RBP3.43□□□□□ -1.86
VPS29-202ENST00000447578 ZNF724A8MTY0 619 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 NCF1CA8MVU1 366 aaPredicted RBP3.43□□□□□ -1.86
VPS29-202ENST00000447578 C9JVG2 144 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 H0Y8G0 127 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 CDC7O00311 574 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 NR5A2O00482 541 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 FBP2O00757 339 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 PRRG1O14668 218 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 COCHO43405 550 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 DUX1O43812 170 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 SNAP91O60641 907 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 ECI2O75521 394 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 TOXO94900 526 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 CDK14O94921 469 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 STAMBPO95630 424 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 CLDN1O95832 211 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 ZDHHC11BP0C7U3 371 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 LINC00032P0C843 101 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 ZNF44P15621 663 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 PRKACGP22612 351 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 SAA4P35542 130 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 MMP12P39900 470 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 TUFMP49411 452 aaKnown RBP3.43□□□□□ -1.86
VPS29-202ENST00000447578 ATP4BP51164 291 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 CCNHP51946 323 aaPredicted RBP3.43□□□□□ -1.86
VPS29-202ENST00000447578 SLC7A2P52569 658 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 ZNF140P52738 457 aaPredicted RBP3.43□□□□□ -1.86
VPS29-202ENST00000447578 STC1P52823 247 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 FOXA1P55317 472 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 RPL26P61254 145 aaKnown RBP3.43□□□□□ -1.86
VPS29-202ENST00000447578 ATP6V0D1P61421 351 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 ELAVL2Q12926 359 aaKnown RBP3.43□□□□□ -1.86
VPS29-202ENST00000447578 GPNMBQ14956 572 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 TSNQ15631 228 aaKnown RBP3.43□□□□□ -1.86
VPS29-202ENST00000447578 FBXO48Q5FWF7 155 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 PWWP2BQ6NUJ5 590 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 PNCKQ6P2M8 343 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 BHLHB9Q6PI77 547 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 ATRAIDQ6UW56 229 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 SCIMPQ6UWF3 145 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 BTNL3Q6UXE8 466 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 C16orf62Q7Z3J2 963 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 CATSPERDQ86XM0 798 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 CDH26Q8IXH8 852 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 SLC38A6Q8IZM9 456 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 ANKFN1Q8N957 763 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 NUP37Q8NFH4 326 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 OR10G7Q8NGN6 311 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 OR9I1Q8NGQ6 314 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 STAG3L4Q8TBR4 150 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 TWIST2Q8WVJ9 160 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 PEX13Q92968 403 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 UPRTQ96BW1 309 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 ASB9Q96DX5 294 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 CNBD2Q96M20 576 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 NSMCE3Q96MG7 304 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 SMIM14Q96QK8 99 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 KCNA7Q96RP8 456 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 TRIB3Q96RU7 358 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 ATOH8Q96SQ7 321 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 CYP2S1Q96SQ9 504 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 GPR21Q99679 349 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 LITAFQ99732 161 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 CENPKQ9BS16 269 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 GPR174Q9BXC1 333 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 BARHL1Q9BZE3 327 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 FAM192AQ9GZU8 254 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 Q9H521 79 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 MED20Q9H944 212 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 IL1RL2Q9HB29 575 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 ELL3Q9HB65 397 aaPredicted RBP3.43□□□□□ -1.86
VPS29-202ENST00000447578 POPDC3Q9HBV1 291 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 DCAF13Q9NV06 445 aaKnown RBP3.43□□□□□ -1.86
VPS29-202ENST00000447578 NLE1Q9NVX2 485 aaPredicted RBP3.43□□□□□ -1.86
VPS29-202ENST00000447578 C2orf42Q9NWW7 574 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms