RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 MED9Q9NWA0 146 aa7.32□□□□□ -1.24
CCDC39-201ENST00000442201 IL20RAQ9UHF4 553 aa7.32□□□□□ -1.24
CCDC39-201ENST00000442201 PCDHGA9Q9Y5G4 932 aaKnown RBP7.32□□□□□ -1.24
CCDC39-201ENST00000442201 TRAV27A0A087WT01 109 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 TMED7-TICAM2A0A0A6YYA0 188 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 HTR3BO95264 441 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 CH25HO95992 272 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 SMIM6P0DI80 62 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 LIFP15018 202 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 RPL35P42766 123 aaKnown RBP7.31□□□□□ -1.24
CCDC39-201ENST00000442201 AIMP2Q13155 320 aaKnown RBP7.31□□□□□ -1.24
CCDC39-201ENST00000442201 RTP5Q14D33 572 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 PGGHGQ32M88 737 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 RTL4Q6ZR62 310 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 CYP4Z2PQ8N1L4 340 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 SLC43A2Q8N370 569 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 CLEC1AQ8NC01 280 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 ZNF540Q8NDQ6 660 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 OR4K17Q8NGC6 315 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 OR5M11Q96RB7 305 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 TNFRSF13CQ96RJ3 184 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 UBQLN3Q9H347 655 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 DUSP21Q9H596 190 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 PTGES2Q9H7Z7 377 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 CCNB1IP1Q9NPC3 277 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 PLCXD1Q9NUJ7 323 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 NUFIP1Q9UHK0 495 aaKnown RBP7.31□□□□□ -1.24
CCDC39-201ENST00000442201 TMED7Q9Y3B3 224 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 CFAP54Q96N23 3096 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 TRABD2BA6NFA1 517 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 TLX2O43763 284 aaPredicted RBP7.31□□□□□ -1.24
CCDC39-201ENST00000442201 INMTO95050 263 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 IFNA4P05014 189 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 CCL3P10147 92 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 ITGA3P26006 1051 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 ZNF41P51814 821 aaPredicted RBP7.31□□□□□ -1.24
CCDC39-201ENST00000442201 EGR4Q05215 589 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 SYT6Q5T7P8 510 aaPredicted RBP7.31□□□□□ -1.24
CCDC39-201ENST00000442201 ZNF468Q5VIY5 522 aaPredicted RBP7.31□□□□□ -1.24
CCDC39-201ENST00000442201 ABHD17BQ5VST6 288 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 YIPF7Q8N8F6 280 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 OR4Q3Q8NH05 313 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 ANGPTL4Q9BY76 406 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 REG4Q9BYZ8 158 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 HEXA-AS1Q9H8Q6 139 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 AMBNQ9NP70 447 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 NANSQ9NR45 359 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 VDAC3Q9Y277 283 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 ZNF337Q9Y3M9 751 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 SNX5Q9Y5X3 404 aa7.31□□□□□ -1.24
CCDC39-201ENST00000442201 TNFSF12-TNFSF13A0A0A6YY99 330 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 LRRN3E7EW58 273 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 WRBO00258 174 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 PRKYO43930 277 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 SUSD5O60279 629 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 NDUFB2O95178 105 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 SLC6A6P31641 620 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 MASP1P48740 699 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 NUDT6P53370 316 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 FXYD6P3P58550 94 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 SLC35A2P78381 396 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 OC90Q02509 493 aaPredicted RBP7.3□□□□□ -1.24
CCDC39-201ENST00000442201 ZNF74Q16587 644 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 PABPC1L2AQ5JQF8 200 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 CCDC190Q86UF4 302 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 P2RY8Q86VZ1 359 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 BEST3Q8N1M1 668 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 FAM26EQ8N5C1 309 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 OR2M3Q8NG83 312 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 OR6M1Q8NGM8 313 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 FRMD6Q96NE9 622 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 NEDD4LQ96PU5 975 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 IFT27Q9BW83 186 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 CCDC90BQ9GZT6 254 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 SH2D2AQ9NP31 389 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 MED17Q9NVC6 651 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 ABI3Q9P2A4 366 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 TRAV36DV7A0A075B6V5 113 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 MPTX1A8MV57 137 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 A8MVM7 634 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 B4DXG7 233 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 P04436 131 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 GLAP06280 429 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 APOBEC1P41238 236 aaKnown RBP7.3□□□□□ -1.24
CCDC39-201ENST00000442201 CYB561P49447 251 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 INPP5JQ15735 1006 aaPredicted RBP7.3□□□□□ -1.24
CCDC39-201ENST00000442201 OCLNQ16625 522 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 TMEM201Q5SNT2 666 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 MEDAGQ5VYS4 303 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 THSD4Q6ZMP0 1018 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 AHSA2Q719I0 299 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 SLC46A3Q7Z3Q1 461 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 VASH2Q86V25 355 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 LRRC17Q8N6Y2 441 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 SLC37A3Q8NCC5 494 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 LIPHQ8WWY8 451 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 NXPE2Q96DL1 559 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 KTI12Q96EK9 354 aaPredicted RBP7.3□□□□□ -1.24
CCDC39-201ENST00000442201 RADILQ96JH8 1075 aa7.3□□□□□ -1.24
CCDC39-201ENST00000442201 MRGPRX4Q96LA9 322 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms