RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 CALCBP10092 127 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 MTHFD2P13995 350 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 CR2P20023 1033 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 SNCAP37840 140 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 EPHA5P54756 1037 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 ZNF436Q9C0F3 470 aaPredicted RBP15.81■□□□□ 0.12
PTPRF-209ENST00000438120 UBQLN3Q9H347 655 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 CGGBP1Q9UFW8 167 aaPredicted RBP15.81■□□□□ 0.12
PTPRF-209ENST00000438120 OR52A1Q9UKL2 312 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 MYH9P35579 1960 aaKnown RBP15.81■□□□□ 0.12
PTPRF-209ENST00000438120 CD14P08571 375 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 CATR1Q13166 79 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 C5orf46Q6UWT4 87 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 BCL7CQ8WUZ0 217 aaPredicted RBP15.81■□□□□ 0.12
PTPRF-209ENST00000438120 KCND3Q9UK17 655 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 DIMT1Q9UNQ2 313 aaKnown RBP15.81■□□□□ 0.12
PTPRF-209ENST00000438120 CCR6P51684 374 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 PRTGQ2VWP7 1150 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 SCCPDHQ8NBX0 429 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 KCNG3Q8TAE7 436 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 MZB1Q8WU39 189 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 DEFB127Q9H1M4 99 aa15.81■□□□□ 0.12
PTPRF-209ENST00000438120 LAMB4A4D0S4 1761 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 HSD17B6O14756 317 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 FPR3P25089 353 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 CPNE4Q96A23 557 aaPredicted RBP15.8■□□□□ 0.12
PTPRF-209ENST00000438120 ACOT8O14734 319 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 EIF1BO60739 113 aaKnown RBP15.8■□□□□ 0.12
PTPRF-209ENST00000438120 NSA2O95478 260 aaKnown RBP15.8■□□□□ 0.12
PTPRF-209ENST00000438120 NFYBP25208 207 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 OGFOD3Q6PK18 319 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 TMEM217Q8N7C4 229 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 DAZAP1Q96EP5 407 aaKnown RBP15.8■□□□□ 0.12
PTPRF-209ENST00000438120 SAT2Q96F10 170 aaPredicted RBP15.8■□□□□ 0.12
PTPRF-209ENST00000438120 OR2M2Q96R28 347 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 PDCD1LG2Q9BQ51 273 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 TIAM2Q8IVF5 1701 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 SLC5A10A0PJK1 596 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 UBBP0CG47 229 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 UBCP0CG48 685 aaKnown RBP15.8■□□□□ 0.12
PTPRF-209ENST00000438120 PEA15Q15121 130 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 ZNF454Q8N9F8 522 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 TOPAZ1Q8N9V7 1692 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 SMLR1H3BR10 107 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 IGFBP1P08833 259 aaPredicted RBP15.8■□□□□ 0.12
PTPRF-209ENST00000438120 GSTP1P09211 210 aaKnown RBP15.8■□□□□ 0.12
PTPRF-209ENST00000438120 AKR1C1Q04828 323 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 C19orf12Q9NSK7 152 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 A0A1W2PR48 441 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 HOXC11O43248 304 aaPredicted RBP15.8■□□□□ 0.12
PTPRF-209ENST00000438120 CLDN1O95832 211 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 TFAP2AP05549 437 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 EIF1P41567 113 aaKnown RBP15.8■□□□□ 0.12
PTPRF-209ENST00000438120 CAMK2BQ13554 666 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 NKAIN1Q4KMZ8 207 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 OR1J2Q8NGS2 313 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 OR4A16Q8NH70 328 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 TMEM38AQ9H6F2 299 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 NT5DC2Q9H857 520 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 TUBG2Q9NRH3 451 aa15.8■□□□□ 0.12
PTPRF-209ENST00000438120 ZIC2O95409 532 aaPredicted RBP15.79■□□□□ 0.12
PTPRF-209ENST00000438120 KIAA1024LP59773 190 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 HACD4Q5VWC8 232 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 AFMIDQ63HM1 303 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 SLC22A24Q8N4F4 322 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 SUMF1Q8NBK3 374 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 LIPHQ8WWY8 451 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 MYEOVQ96EZ4 313 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 MYOTQ9UBF9 498 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 ASB1Q9Y576 335 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 RNF212BA8MTL3 300 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 TRHRP34981 398 aaPredicted RBP15.79■□□□□ 0.12
PTPRF-209ENST00000438120 TGM4P49221 684 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 BAXQ07812 192 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 CLINT1Q14677 625 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 GLIPR1L1Q6UWM5 242 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 PRSS45Q7RTY3 260 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 ZNF687Q8N1G0 1237 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 CNTNAP3Q9BZ76 1288 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 EMC7Q9NPA0 242 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 WASH6PQ9NQA3 447 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 SYT5O00445 386 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 PHF1O43189 567 aaPredicted RBP15.79■□□□□ 0.12
PTPRF-209ENST00000438120 MFGE8Q08431 387 aaPredicted RBP15.79■□□□□ 0.12
PTPRF-209ENST00000438120 PLA2G7Q13093 441 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 FXNQ16595 210 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 PHLDA2Q53GA4 152 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 RPS19BP1Q86WX3 136 aaKnown RBP15.79■□□□□ 0.12
PTPRF-209ENST00000438120 SIAH3Q8IW03 269 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 ZADH2Q8N4Q0 377 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 BANF2Q9H503 90 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 DAPP1Q9UN19 280 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 ZNF728P0DKX0 622 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 PSMB1P20618 241 aaKnown RBP15.79■□□□□ 0.12
PTPRF-209ENST00000438120 NFYAP23511 347 aaPredicted RBP15.79■□□□□ 0.12
PTPRF-209ENST00000438120 ATPAF1Q5TC12 328 aaPredicted RBP15.79■□□□□ 0.12
PTPRF-209ENST00000438120 OR56B4Q8NH76 319 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 ANKRD9Q96BM1 317 aaPredicted RBP15.79■□□□□ 0.12
PTPRF-209ENST00000438120 UPRTQ96BW1 309 aa15.79■□□□□ 0.12
PTPRF-209ENST00000438120 TMEM30AQ9NV96 361 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms