RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 C5orf52A6NGY3 159 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 LDB3O75112 727 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 CD34P28906 385 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 RBM34P42696 430 aaKnown RBP9.74□□□□□ -0.85
USP54-204ENST00000422491 CAPZA1P52907 286 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 TAS2R19P59542 299 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 SNRPNP63162 240 aaKnown RBP9.74□□□□□ -0.85
USP54-204ENST00000422491 TRMT12Q53H54 448 aaKnown RBP9.74□□□□□ -0.85
USP54-204ENST00000422491 UNQ6126/PRO20091Q6UXV3 157 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 GALNT16Q8N428 558 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 PAQR8Q8TEZ7 354 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 PTCHD1Q96NR3 888 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 CNTNAP3BQ96NU0 1288 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 KCNK15Q9H427 330 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 UQCC1Q9NVA1 299 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 MRM2Q9UI43 246 aaKnown RBP9.74□□□□□ -0.85
USP54-204ENST00000422491 KLHDC2Q9Y2U9 406 aa9.74□□□□□ -0.85
USP54-204ENST00000422491 NUP210LQ5VU65 1888 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 OR2AT4A6NND4 320 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 NUDT19A8MXV4 375 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 F8VVB4 439 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 F8VWA3 439 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 UBE2CO00762 179 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 GNB5O14775 395 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 RAB3DO95716 219 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 ABHD16AO95870 558 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 SLC35G4P0C7Q5 338 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 ZNF806P0C7X5 589 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 ZNF735P0CB33 412 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 HLA-GP17693 338 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 POU3F4P49335 361 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 RAB28P51157 221 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 ACTBP60709 375 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 ACTG1P63261 375 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 CXADRP78310 365 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 BTN3A2P78410 334 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 LIN54Q6MZP7 749 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 TMPRSS9Q7Z410 1059 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 MISPQ8IVT2 679 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 OR10AC1Q8NH08 325 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 ING5Q8WYH8 240 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 NXPE3Q969Y0 559 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 PIK3IP1Q96FE7 263 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 RBM18Q96H35 190 aaKnown RBP9.73□□□□□ -0.85
USP54-204ENST00000422491 BCL2L14Q9BZR8 327 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 TINAGL1Q9GZM7 467 aaPredicted RBP9.73□□□□□ -0.85
USP54-204ENST00000422491 TMEM231Q9H6L2 316 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 SEBOXQ9HB31 216 aaPredicted RBP9.73□□□□□ -0.85
USP54-204ENST00000422491 LAMA3Q16787 3333 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 A0A1B0GTH9 108 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 SRPX2O60687 465 aaPredicted RBP9.73□□□□□ -0.85
USP54-204ENST00000422491 ICOSLGO75144 302 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 GLCEO94923 617 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 FNDC3BQ53EP0 1204 aaKnown RBP9.73□□□□□ -0.85
USP54-204ENST00000422491 FHL5Q5TD97 284 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 FIGNL1Q6PIW4 674 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 NDUFAF7Q7L592 441 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 OR4N5Q8IXE1 308 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 ZNF595Q8IYB9 648 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 PAQR4Q8N4S7 273 aaPredicted RBP9.73□□□□□ -0.85
USP54-204ENST00000422491 RAB42Q8N4Z0 105 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 TMEM229BQ8NBD8 167 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 SLC30A7Q8NEW0 376 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 ZNF417Q8TAU3 575 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 TMEM106AQ96A25 262 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 MYADMQ96S97 322 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 MMP26Q9NRE1 261 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 DTX4Q9Y2E6 619 aa9.73□□□□□ -0.85
USP54-204ENST00000422491 NOP16Q9Y3C1 178 aaKnown RBP9.73□□□□□ -0.85
USP54-204ENST00000422491 SCN3AQ9NY46 2000 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 M0QYG6 137 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 CXCL14O95715 111 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 HLA-AP01891 365 aaKnown RBP9.72□□□□□ -0.85
USP54-204ENST00000422491 CD74P04233 296 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 ITGA5P08648 1049 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 CCR2P41597 374 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 RAB5BP61020 215 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 KCNAB1Q14722 419 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 ALG10BQ5I7T1 473 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 TMEM205Q6UW68 189 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 LINC00114Q6XXX2 140 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 SLC39A5Q6ZMH5 540 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 ERN2Q76MJ5 926 aaKnown RBP9.72□□□□□ -0.85
USP54-204ENST00000422491 OR51A4Q8NGJ6 313 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 OR13C8Q8NGS7 320 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 SLC22A8Q8TCC7 542 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 DOK4Q8TEW6 326 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 SEH1LQ96EE3 360 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 INSM2Q96T92 566 aaPredicted RBP9.72□□□□□ -0.85
USP54-204ENST00000422491 EGLN1Q9GZT9 426 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 OR51M1Q9H341 326 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 TREM1Q9NP99 234 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 NIT2Q9NQR4 276 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 RXFP3Q9NSD7 469 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 FBXL21Q9UKT6 434 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 ZNF346Q9UL40 294 aaKnown RBP9.72□□□□□ -0.85
USP54-204ENST00000422491 TMEM72A0PK05 275 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 CPED1A4D0V7 1026 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 OR4C45A6NMZ5 311 aa9.72□□□□□ -0.85
USP54-204ENST00000422491 FAM171A2A8MVW0 826 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms