RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 MARVELD1Q9BSK0 173 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 VN1R1Q9GZP7 353 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 COA3Q9Y2R0 106 aaPredicted RBP12.13□□□□□ -0.47
VPS54-203ENST00000409558 POLR1DQ9Y2S0 133 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 IFITM5A6NNB3 132 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 RAD52P43351 418 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 GALK2Q01415 458 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 SLC36A2Q495M3 483 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 KLRF1Q9NZS2 232 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 ITGA10O75578 1167 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 NME1P15531 152 aaKnown RBP12.13□□□□□ -0.47
VPS54-203ENST00000409558 FUT7Q11130 342 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 POU4F2Q12837 409 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 TOMM20Q15388 145 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 STAC2Q6ZMT1 411 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 FAM181AQ8N9Y4 354 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 B9D1Q9UPM9 204 aa12.13□□□□□ -0.47
VPS54-203ENST00000409558 TTC28Q96AY4 2481 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 ZNF354AO60765 605 aaPredicted RBP12.12□□□□□ -0.47
VPS54-203ENST00000409558 CTLA4P16410 223 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 CD27P26842 260 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 TDGQ13569 410 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 C14orf28Q4W4Y0 310 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 ARSKQ6UWY0 536 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 Q6ZTK2 550 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 CHMP1BQ7LBR1 199 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 ATG4DQ86TL0 474 aaPredicted RBP12.12□□□□□ -0.47
VPS54-203ENST00000409558 MEIOBQ8N635 442 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 S100A16Q96FQ6 103 aaKnown RBP12.12□□□□□ -0.47
VPS54-203ENST00000409558 INTS14Q96SY0 518 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 GFI1Q99684 422 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 SLC2A4RGQ9NR83 387 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 KLHL21Q9UJP4 597 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 ING4Q9UNL4 249 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 BAIAP2Q9UQB8 552 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 LMX1BO60663 402 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 SCO1O75880 301 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 F10P00742 488 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 ADRA2CP18825 462 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 SDHAP31040 664 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 CSF2RBP32927 897 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 BTCP35070 178 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 PRKXP51817 358 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 PRSS12P56730 875 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 POU3F1Q03052 451 aaPredicted RBP12.12□□□□□ -0.47
VPS54-203ENST00000409558 CCDC58Q4VC31 144 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 MANEAQ5SRI9 462 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 LINC01590Q5TEZ4 76 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 TMEM205Q6UW68 189 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 SLC38A9Q8NBW4 561 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 C1QTNF6Q9BXI9 259 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.12□□□□□ -0.47
VPS54-203ENST00000409558 COMMD4Q9H0A8 199 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 OR5V1Q9UGF6 321 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 METTL12A8MUP2 240 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 TIAF1O95411 115 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 RBM34P42696 430 aaKnown RBP12.12□□□□□ -0.47
VPS54-203ENST00000409558 C19orf57Q0VDD7 668 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 ALKBH1Q13686 389 aaKnown RBP12.12□□□□□ -0.47
VPS54-203ENST00000409558 NKPD1Q17RQ9 610 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 PCGF3Q3KNV8 242 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 PHF19Q5T6S3 580 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 POMGNT2Q8NAT1 580 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 OR4D10Q8NGI6 311 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 KIAA1143Q96AT1 154 aaPredicted RBP12.12□□□□□ -0.47
VPS54-203ENST00000409558 ATG5Q9H1Y0 275 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 LANCL2Q9NS86 450 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 SUSD2Q9UGT4 822 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 SERTAD3Q9UJW9 196 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 EMC9Q9Y3B6 208 aa12.12□□□□□ -0.47
VPS54-203ENST00000409558 ERVH48-1M5A8F1 160 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 DNASE1P24855 282 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 BLVRAP53004 296 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 HSD11B2P80365 405 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 EIF2B1Q14232 305 aaKnown RBP12.11□□□□□ -0.47
VPS54-203ENST00000409558 LRRC37A5PQ49AS3 106 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 TRILQ7L0X0 811 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 OR6C1Q96RD1 312 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 CMKLR1Q99788 373 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 SOSTQ9BQB4 213 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 ZNF426Q9BUY5 554 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 APMAPQ9HDC9 416 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 ANKRD10Q9NXR5 420 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 TMED7-TICAM2A0A0A6YYA0 188 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 A0A1W2PNR3 127 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 ZNF780AO75290 641 aaPredicted RBP12.11□□□□□ -0.47
VPS54-203ENST00000409558 UBL3O95164 117 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 CFIP05156 583 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 ERP29P30040 261 aaKnown RBP12.11□□□□□ -0.47
VPS54-203ENST00000409558 SELENOPP49908 381 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 PSMD4P55036 377 aaKnown RBP12.11□□□□□ -0.47
VPS54-203ENST00000409558 ACSM1Q08AH1 577 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 SERTAD2Q14140 314 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 COL28A1Q2UY09 1125 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 SCGB2B2Q4G0G5 96 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 CDONQ4KMG0 1287 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 TCTE1Q5JU00 501 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 SYT13Q7L8C5 426 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 KCNJ15Q99712 375 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 INPP5EQ9NRR6 644 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms