RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 HDAC2Q92769 488 aaKnown RBP16.04■□□□□ 0.16
SDC1-203ENST00000403076 OR2M2Q96R28 347 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 TTYH2Q9BSA4 534 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 RERGLQ9H628 205 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 ZNF226Q9NYT6 803 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 H2AFY2Q9P0M6 372 aaPredicted RBP16.04■□□□□ 0.16
SDC1-203ENST00000403076 AASSQ9UDR5 926 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 HSPE1-MOB4S4R3N1 261 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 PRSS37A4D1T9 235 aa16.03■□□□□ 0.16
SDC1-203ENST00000403076 B8ZZF3 427 aa16.03■□□□□ 0.16
SDC1-203ENST00000403076 DENRO43583 198 aaKnown RBP16.03■□□□□ 0.16
SDC1-203ENST00000403076 SS18L1O75177 396 aaPredicted RBP16.03■□□□□ 0.16
SDC1-203ENST00000403076 AGTR1P30556 359 aa16.03■□□□□ 0.16
SDC1-203ENST00000403076 CSNK1A1P48729 337 aa16.03■□□□□ 0.16
SDC1-203ENST00000403076 PMPCAQ10713 525 aa16.03■□□□□ 0.16
SDC1-203ENST00000403076 MRPL49Q13405 166 aaKnown RBP16.03■□□□□ 0.16
SDC1-203ENST00000403076 MED21Q13503 144 aa16.03■□□□□ 0.16
SDC1-203ENST00000403076 ZNF362Q5T0B9 420 aaPredicted RBP16.03■□□□□ 0.16
SDC1-203ENST00000403076 PLBD1Q6P4A8 553 aa16.03■□□□□ 0.16
SDC1-203ENST00000403076 SEM1Q6ZVN7 128 aa16.03■□□□□ 0.16
SDC1-203ENST00000403076 NUFIP2Q7Z417 695 aaKnown RBP16.03■□□□□ 0.16
SDC1-203ENST00000403076 NPEPL1Q8NDH3 523 aa16.03■□□□□ 0.16
SDC1-203ENST00000403076 RBP7Q96R05 134 aa16.03■□□□□ 0.16
SDC1-203ENST00000403076 C12orf49Q9H741 205 aa16.03■□□□□ 0.16
SDC1-203ENST00000403076 MED20Q9H944 212 aa16.03■□□□□ 0.16
SDC1-203ENST00000403076 CLN6Q9NWW5 311 aa16.03■□□□□ 0.16
SDC1-203ENST00000403076 NBEAQ8NFP9 2946 aa16.02■□□□□ 0.16
SDC1-203ENST00000403076 FAM183AA6NL82 134 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 KRT33AO76009 404 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 TMIGD3P0DMS9 266 aaPredicted RBP16.02■□□□□ 0.15
SDC1-203ENST00000403076 GLI4P10075 376 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 NTF4P34130 210 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 TIMP3P35625 211 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 CA7P43166 264 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 ISL1P61371 349 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 SNRPGP62308 76 aaKnown RBP16.02■□□□□ 0.15
SDC1-203ENST00000403076 MAD2L1BPQ15013 274 aaPredicted RBP16.02■□□□□ 0.15
SDC1-203ENST00000403076 EIF2S3LQ2VIR3 472 aaKnown RBP16.02■□□□□ 0.15
SDC1-203ENST00000403076 TMEM211Q6ICI0 200 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 FAM214BQ7L5A3 538 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.02■□□□□ 0.15
SDC1-203ENST00000403076 WDFY1Q8IWB7 410 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 NOXO1Q8NFA2 376 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 RHOXF1Q8NHV9 184 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 APH1AQ96BI3 265 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 LRR1Q96L50 414 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 ZFP3Q96NJ6 502 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 KCNK17Q96T54 332 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 ALG12Q9BV10 488 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 SYT4Q9H2B2 425 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 FN3KQ9H479 309 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 SRA1Q9HD15 236 aaKnown RBP16.02■□□□□ 0.15
SDC1-203ENST00000403076 HINT3Q9NQE9 182 aaKnown RBP16.02■□□□□ 0.15
SDC1-203ENST00000403076 RPRD1BQ9NQG5 326 aaKnown RBP16.02■□□□□ 0.15
SDC1-203ENST00000403076 ZFYVE26Q68DK2 2539 aa16.02■□□□□ 0.15
SDC1-203ENST00000403076 SLC22A23A1A5C7 686 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 OR6C68A6NDL8 312 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 E9PLN8 166 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 ZNF432O94892 652 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 PGA4P0DJD7 388 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 PGA3P0DJD8 388 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 NR2C1P13056 603 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 KLHL12Q53G59 568 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 BCDIN3DQ7Z5W3 292 aaKnown RBP16.01■□□□□ 0.15
SDC1-203ENST00000403076 TMEM123Q8N131 208 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 GPR137CQ8N3F9 429 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 FAM26EQ8N5C1 309 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 OR9Q1Q8NGQ5 310 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 CNIH3Q8TBE1 160 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 Q96MT0 163 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 SNX18Q96RF0 628 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 VKORC1Q9BQB6 163 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 MRPL13Q9BYD1 178 aaKnown RBP16.01■□□□□ 0.15
SDC1-203ENST00000403076 OR51V1Q9H2C8 321 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 B3GAT2Q9NPZ5 323 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 DNAJC27Q9NZQ0 273 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 VSX1Q9NZR4 365 aaPredicted RBP16.01■□□□□ 0.15
SDC1-203ENST00000403076 MED12LQ86YW9 2145 aa16.01■□□□□ 0.15
SDC1-203ENST00000403076 CENPBD1B2RD01 187 aa16■□□□□ 0.15
SDC1-203ENST00000403076 M0R3G1 203 aa16■□□□□ 0.15
SDC1-203ENST00000403076 AHCYL1O43865 530 aa16■□□□□ 0.15
SDC1-203ENST00000403076 TOXO94900 526 aa16■□□□□ 0.15
SDC1-203ENST00000403076 CRHP06850 196 aa16■□□□□ 0.15
SDC1-203ENST00000403076 CENPAP49450 140 aa16■□□□□ 0.15
SDC1-203ENST00000403076 RPS7P62081 194 aaKnown RBP16■□□□□ 0.15
SDC1-203ENST00000403076 EFNB1P98172 346 aa16■□□□□ 0.15
SDC1-203ENST00000403076 LGALS3BPQ08380 585 aa16■□□□□ 0.15
SDC1-203ENST00000403076 FOXF2Q12947 444 aa16■□□□□ 0.15
SDC1-203ENST00000403076 IGFBP7Q16270 282 aa16■□□□□ 0.15
SDC1-203ENST00000403076 SOWAHCQ53LP3 525 aaPredicted RBP16■□□□□ 0.15
SDC1-203ENST00000403076 THEM4Q5T1C6 240 aa16■□□□□ 0.15
SDC1-203ENST00000403076 ATCAYQ86WG3 371 aa16■□□□□ 0.15
SDC1-203ENST00000403076 ZNF843Q8N446 348 aa16■□□□□ 0.15
SDC1-203ENST00000403076 GALNT11Q8NCW6 608 aa16■□□□□ 0.15
SDC1-203ENST00000403076 FNDC8Q8TC99 324 aa16■□□□□ 0.15
SDC1-203ENST00000403076 TSSK2Q96PF2 358 aa16■□□□□ 0.15
SDC1-203ENST00000403076 SLCO5A1Q9H2Y9 848 aa16■□□□□ 0.15
SDC1-203ENST00000403076 ASB6Q9NWX5 421 aa16■□□□□ 0.15
SDC1-203ENST00000403076 GLTPQ9NZD2 209 aa16■□□□□ 0.15
SDC1-203ENST00000403076 UPB1Q9UBR1 384 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms