RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ZCWPW2A0A1B0GU75 182 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 OR6C65A6NJZ3 312 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 ACOD1A6NK06 481 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 P2RY10O00398 339 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 ACOT8O14734 319 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 SLC16A6O15403 523 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 PHF1O43189 567 aaPredicted RBP6.64□□□□□ -1.35
UPF2-203ENST00000397053 OR5G3P0C626 314 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 CD68P34810 354 aaPredicted RBP6.64□□□□□ -1.35
UPF2-203ENST00000397053 BMI1P35226 326 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 ZNF93P35789 620 aaPredicted RBP6.64□□□□□ -1.35
UPF2-203ENST00000397053 MARCH3Q86UD3 253 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 CATSPERDQ86XM0 798 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 EGFL6Q8IUX8 553 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 SPEM1Q8N4L4 309 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 PAQR8Q8TEZ7 354 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 TMIGD2Q96BF3 282 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 FAM122AQ96E09 287 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 TNFRSF13CQ96RJ3 184 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 TINAGL1Q9GZM7 467 aaPredicted RBP6.64□□□□□ -1.35
UPF2-203ENST00000397053 ADAM19Q9H013 955 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 C1orf123Q9NWV4 160 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 CD300AQ9UGN4 299 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 MUTYHQ9UIF7 546 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 COPS3Q9UNS2 423 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 HRH3Q9Y5N1 445 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 MRC1P22897 1456 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 UNC13CQ8NB66 2214 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 CDHR4A6H8M9 788 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 GRB2P62993 217 aaKnown RBP6.64□□□□□ -1.35
UPF2-203ENST00000397053 SNTB1Q13884 538 aaKnown RBP6.64□□□□□ -1.35
UPF2-203ENST00000397053 GLYR1Q49A26 553 aaPredicted RBP6.64□□□□□ -1.35
UPF2-203ENST00000397053 H1FNTQ75WM6 255 aaPredicted RBP6.64□□□□□ -1.35
UPF2-203ENST00000397053 KDM8Q8N371 416 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 SLC22A24Q8N4F4 322 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 OR51H1Q8NH63 302 aa6.64□□□□□ -1.35
UPF2-203ENST00000397053 SAV1Q9H4B6 383 aaPredicted RBP6.64□□□□□ -1.35
UPF2-203ENST00000397053 IGKV6D-21A0A0A0MT36 114 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 TRAV17A0A0B4J275 112 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 B3GALNT1O75752 331 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 NSA2O95478 260 aaKnown RBP6.63□□□□□ -1.35
UPF2-203ENST00000397053 GLRA1P23415 457 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 RAB6CQ53S08 254 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 YOD1Q5VVQ6 348 aaPredicted RBP6.63□□□□□ -1.35
UPF2-203ENST00000397053 C1orf140Q5VVS0 124 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 CD300LGQ6UXG3 332 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 GRINAQ7Z429 371 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 LRRC56Q8IYG6 542 aaPredicted RBP6.63□□□□□ -1.35
UPF2-203ENST00000397053 ZNF321PQ8N8H1 164 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 PINX1Q96BK5 328 aaKnown RBP6.63□□□□□ -1.35
UPF2-203ENST00000397053 FGGYQ96C11 551 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 RAB6CQ9H0N0 254 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 CCL26Q9Y258 94 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 SLC5A6Q9Y289 635 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 PRSS21Q9Y6M0 314 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 CCDC187A0A096LP49 1063 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 A0A1B0GWA3 101 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 RPS10-NUDT3A0A1W2PQS6 291 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 HS3ST1O14792 307 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 SLC31A2O15432 143 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 AKR7A3O95154 331 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 GUSBP08236 651 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 CD14P08571 375 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 RPS17P08708 135 aaKnown RBP6.63□□□□□ -1.35
UPF2-203ENST00000397053 C1SP09871 688 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 APEHP13798 732 aaKnown RBP6.63□□□□□ -1.35
UPF2-203ENST00000397053 S100A4P26447 101 aaKnown RBP6.63□□□□□ -1.35
UPF2-203ENST00000397053 APEX1P27695 318 aaKnown RBP6.63□□□□□ -1.35
UPF2-203ENST00000397053 CA5AP35218 305 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 BCL6P41182 706 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 RPS10P46783 165 aaKnown RBP6.63□□□□□ -1.35
UPF2-203ENST00000397053 ZNF140P52738 457 aaPredicted RBP6.63□□□□□ -1.35
UPF2-203ENST00000397053 UBE2KP61086 200 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 HBA1P69905 142 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 TSPAN31Q12999 210 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 CLINT1Q14677 625 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 RTL8BQ17RB0 113 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 NXNL2Q5VZ03 156 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 OR8G2PQ6IF36 304 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 GABRG1Q8N1C3 465 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 TMEM217Q8N7C4 229 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 OR4F15Q8NGB8 312 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 OR8U1Q8NH10 309 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 FAM213BQ8TBF2 198 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 TMEM163Q8TC26 289 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 KISS1RQ969F8 398 aaPredicted RBP6.63□□□□□ -1.35
UPF2-203ENST00000397053 BTF3L4Q96K17 158 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 ZNF251Q9BRH9 671 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 CCDC106Q9BWC9 280 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 HDAC8Q9BY41 377 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 OR51J1Q9H342 316 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 FN3KRPQ9HA64 309 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 IGSF5Q9NSI5 407 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 ZC3H13Q5T200 1668 aaKnown RBP6.63□□□□□ -1.35
UPF2-203ENST00000397053 DNAJC25-GNG10A0A024R161 153 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 LRP5LA4QPB2 252 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 CDK2AP1O14519 115 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 MAP2K6P52564 334 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 MEP1BQ16820 701 aa6.63□□□□□ -1.35
UPF2-203ENST00000397053 ADAMTSL4Q6UY14 1074 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms