RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ATP6V1G2-DDX39BF2Z307 99 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 H3BNC9 293 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 DTYMKP23919 212 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 C21orf33P30042 268 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 RPS25P62851 125 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 C17orf99Q6UX52 265 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 ZNF705AQ6ZN79 300 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 Q6ZRG5 221 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 SLC38A5Q8WUX1 472 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 OSGIN2Q9Y236 505 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 NWD2Q9ULI1 1742 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 P2RY10O00398 339 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 NME2P22392 152 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 RPS23P62266 143 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 OPCMLQ14982 345 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 SPCS2Q15005 226 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 MEP1BQ16820 701 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 HSF5Q4G112 596 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 KDM8Q8N371 416 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 DUSP13Q9UII6 198 aa11.83□□□□□ -0.52
CCDC88C-204ENST00000389857 H7C1C5 153 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 UBL3O95164 117 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 GIPRP48546 466 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 LCN6P62502 163 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 SLC35A2P78381 396 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 RAB35Q15286 201 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 SOHLH1Q5JUK2 328 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 PHYHD1Q5SRE7 291 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 STEAP1BQ6NZ63 245 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 HIST2H3AQ71DI3 136 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 FAM58AQ8N1B3 248 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 OR2L13Q8N349 312 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 EDAQ92838 391 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 POFUT1Q9H488 388 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 ANGPTL7O43827 346 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 HOXD9P28356 352 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 CCL11P51671 97 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 ZNF687Q8N1G0 1237 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 LRRC15Q8TF66 581 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 PHYHIPQ92561 330 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 TMEM43Q9BTV4 400 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 SLC22A11Q9NSA0 550 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 FBXL2Q9UKC9 423 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 CTRB1P17538 263 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 C9orf152Q5JTZ5 239 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 OR2G6Q5TZ20 316 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 CTRB2Q6GPI1 263 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 GHSRQ92847 366 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 DHRS4Q9BTZ2 278 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 ATP13A2Q9NQ11 1180 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 PMS2P2O95744 297 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 MT-ATP6P00846 226 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 TAGLN2P37802 199 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 TESK1Q15569 626 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 ARHGAP11BQ3KRB8 267 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 SLC7A5P1Q8MH63 180 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 TMEM217Q8N7C4 229 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 TNFRSF13CQ96RJ3 184 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 ATF6BQ99941 703 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 CPPED1Q9BRF8 314 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 RTL8AQ9BWD3 113 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 SLC16A6O15403 523 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 NUPL2O15504 423 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 FABP6P51161 128 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 BTN1A1Q13410 526 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 CLINT1Q14677 625 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 TMEFF1Q8IYR6 380 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 ENTHD1Q8IYW4 607 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 CLDN22Q8N7P3 220 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 OR10K1Q8NGX5 313 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 GOT1L1Q8NHS2 421 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 ZNF775Q96BV0 537 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 FAM122AQ96E09 287 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 C3orf30Q96M34 536 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 ATOH8Q96SQ7 321 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 RIMS4Q9H426 269 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 SAGE1Q9NXZ1 904 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 TMEM200CA6NKL6 621 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 GFRA2O00451 464 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 ZNF626Q68DY1 528 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 FBXO27Q8NI29 283 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 HPSE2Q8WWQ2 592 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 UTP4Q969X6 686 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 C20orf85Q9H1P6 137 aa11.82□□□□□ -0.52
CCDC88C-204ENST00000389857 TLCD2A6NGC4 264 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 DOK2O60496 412 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 ALPLP05186 524 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 GLAP06280 429 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 M6PRP20645 277 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 FAM78AQ5JUQ0 283 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 ALKAL2Q6UX46 152 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 LFNGQ8NES3 379 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 TMEM106AQ96A25 262 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 EMC7Q9NPA0 242 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 PRAMEF25A6NGN4 478 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 RFX2P48378 723 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 CYB561P49447 251 aa11.81□□□□□ -0.52
CCDC88C-204ENST00000389857 NKAIN2Q5VXU1 208 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms