RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 TMEM72A0PK05 275 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 NTN3O00634 580 aaPredicted RBP19.46■□□□□ 0.71
TRIM54-202ENST00000380075 ORC5O43913 435 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 INSM1Q01101 510 aaPredicted RBP19.46■□□□□ 0.71
TRIM54-202ENST00000380075 ALKBH1Q13686 389 aaKnown RBP19.46■□□□□ 0.71
TRIM54-202ENST00000380075 OR6V1Q8N148 313 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 UBE2J2Q8N2K1 259 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 NUBPLQ8TB37 319 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 METTL21AQ8WXB1 218 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 TMEM234Q8WY98 164 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 NOX4Q9NPH5 578 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 LAMP5Q9UJQ1 280 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 PPIEQ9UNP9 301 aaKnown RBP19.46■□□□□ 0.71
TRIM54-202ENST00000380075 SCO2O43819 266 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 OR2T1O43869 369 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 UPK3AO75631 287 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 ZNF432O94892 652 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 SUMO3P55854 103 aaPredicted RBP19.46■□□□□ 0.71
TRIM54-202ENST00000380075 ANKRD37Q7Z713 158 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 ADAMTS14Q8WXS8 1223 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 ITFG2Q969R8 447 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 RNF166Q96A37 237 aaPredicted RBP19.46■□□□□ 0.71
TRIM54-202ENST00000380075 CREB3L1Q96BA8 519 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 GFM1Q96RP9 751 aaKnown RBP19.46■□□□□ 0.71
TRIM54-202ENST00000380075 INTS14Q96SY0 518 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 BRD7Q9NPI1 651 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 MRM2Q9UI43 246 aaKnown RBP19.46■□□□□ 0.71
TRIM54-202ENST00000380075 FKBP7Q9Y680 259 aa19.46■□□□□ 0.71
TRIM54-202ENST00000380075 DXOO77932 396 aaKnown RBP19.45■□□□□ 0.7
TRIM54-202ENST00000380075 ZFPL1O95159 310 aa19.45■□□□□ 0.7
TRIM54-202ENST00000380075 ABHD16AO95870 558 aa19.45■□□□□ 0.7
TRIM54-202ENST00000380075 HEXBP07686 556 aa19.45■□□□□ 0.7
TRIM54-202ENST00000380075 AHCYP23526 432 aa19.45■□□□□ 0.7
TRIM54-202ENST00000380075 GRPRP30550 384 aa19.45■□□□□ 0.7
TRIM54-202ENST00000380075 ZFP69Q49AA0 526 aa19.45■□□□□ 0.7
TRIM54-202ENST00000380075 NKAIN1Q4KMZ8 207 aa19.45■□□□□ 0.7
TRIM54-202ENST00000380075 C1orf140Q5VVS0 124 aa19.45■□□□□ 0.7
TRIM54-202ENST00000380075 ZNF574Q6ZN55 896 aaPredicted RBP19.45■□□□□ 0.7
TRIM54-202ENST00000380075 ADGRG3Q86Y34 549 aa19.45■□□□□ 0.7
TRIM54-202ENST00000380075 YIPF7Q8N8F6 280 aa19.45■□□□□ 0.7
TRIM54-202ENST00000380075 OR4D9Q8NGE8 314 aa19.45■□□□□ 0.7
TRIM54-202ENST00000380075 DERL3Q96Q80 235 aa19.45■□□□□ 0.7
TRIM54-202ENST00000380075 CCDC86Q9H6F5 360 aaKnown RBP19.45■□□□□ 0.7
TRIM54-202ENST00000380075 NLKQ9UBE8 527 aa19.45■□□□□ 0.7
TRIM54-202ENST00000380075 SPTBN4Q9H254 2564 aa19.45■□□□□ 0.7
TRIM54-202ENST00000380075 A0A1W2PPK0 400 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 PRR32B1ATL7 298 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 DCTN6O00399 190 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 ARHGEF9O43307 516 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 AHSA1O95433 338 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 ONECUT2O95948 504 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 IGHMP01871 453 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 ID4P47928 161 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 MMP15P51511 669 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 NANOS3P60323 173 aaKnown RBP19.44■□□□□ 0.7
TRIM54-202ENST00000380075 RPL27P61353 136 aaKnown RBP19.44■□□□□ 0.7
TRIM54-202ENST00000380075 TATDN3Q17R31 274 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 LIPNQ5VXI9 398 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 BICRALQ6AI39 1079 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 POMZP3Q6PJE2 187 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 NFAM1Q8NET5 270 aaPredicted RBP19.44■□□□□ 0.7
TRIM54-202ENST00000380075 OR5H6Q8NGV6 325 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 SYT4Q9H2B2 425 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 CAMK2AQ9UQM7 478 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 A0A0B4J293 547 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 IDSB3KWA1 339 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 CTDSPLO15194 276 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 GMFGO60234 142 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 OR8G3PP0DMU2 310 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 SNRPBP14678 240 aaKnown RBP19.44■□□□□ 0.7
TRIM54-202ENST00000380075 ALOX5APP20292 161 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 SLC6A1P30531 599 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 UBE2NLQ5JXB2 153 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 APCDD1LQ8NCL9 501 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 OR6N2Q8NGY6 317 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 OR5AK2Q8NH90 309 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 ZNF671Q8TAW3 534 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 ST8SIA1Q92185 356 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 THRSPQ92748 146 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 RNF31Q96EP0 1072 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 ABHD1Q96SE0 405 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 SLITRK2Q9H156 845 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 DDX28Q9NUL7 540 aaKnown RBP19.44■□□□□ 0.7
TRIM54-202ENST00000380075 RARRES3Q9UL19 164 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 AK6Q9Y3D8 172 aaKnown RBP19.44■□□□□ 0.7
TRIM54-202ENST00000380075 N6AMT1Q9Y5N5 214 aa19.44■□□□□ 0.7
TRIM54-202ENST00000380075 CENPXA8MT69 81 aa19.43■□□□□ 0.7
TRIM54-202ENST00000380075 D6RAR5 112 aa19.43■□□□□ 0.7
TRIM54-202ENST00000380075 AIPO00170 330 aa19.43■□□□□ 0.7
TRIM54-202ENST00000380075 PIN1P1O15428 100 aa19.43■□□□□ 0.7
TRIM54-202ENST00000380075 ALOX12BO75342 701 aa19.43■□□□□ 0.7
TRIM54-202ENST00000380075 NAGAP17050 411 aa19.43■□□□□ 0.7
TRIM54-202ENST00000380075 BTG1P62324 171 aa19.43■□□□□ 0.7
TRIM54-202ENST00000380075 GPR176Q14439 515 aa19.43■□□□□ 0.7
TRIM54-202ENST00000380075 Q499Y3 187 aa19.43■□□□□ 0.7
TRIM54-202ENST00000380075 ZNF519Q8TB69 540 aa19.43■□□□□ 0.7
TRIM54-202ENST00000380075 UBASH3BQ8TF42 649 aa19.43■□□□□ 0.7
TRIM54-202ENST00000380075 DUSP19Q8WTR2 217 aa19.43■□□□□ 0.7
TRIM54-202ENST00000380075 MAP6Q96JE9 813 aa19.43■□□□□ 0.7
TRIM54-202ENST00000380075 OR6C1Q96RD1 312 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms