RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 HDGFL3Q9Y3E1 203 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 GRIP1Q9Y3R0 1128 aa12.35□□□□□ -0.43
PTPRF-202ENST00000372405 RPS27P42677 84 aaKnown RBP12.34□□□□□ -0.43
PTPRF-202ENST00000372405 OR2B6P58173 313 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 FOXO1Q12778 655 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 CRTC2Q53ET0 693 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-202ENST00000372405 ZNF684Q5T5D7 378 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 ABHD17BQ5VST6 288 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 OTPQ5XKR4 325 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 SLC35D2Q76EJ3 337 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 SLC16A9Q7RTY1 509 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 TMPRSS7Q7RTY8 843 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 ZNF248Q8NDW4 579 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 ADPRHL1Q8NDY3 354 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 PELI1Q96FA3 418 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 FOXN4Q96NZ1 517 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 HES7Q9BYE0 225 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 NXF2Q9GZY0 626 aaKnown RBP12.34□□□□□ -0.43
PTPRF-202ENST00000372405 MARCH7Q9H992 704 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 TRIM36Q9NQ86 728 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 CCDC59Q9P031 241 aaKnown RBP12.34□□□□□ -0.43
PTPRF-202ENST00000372405 PCDHGB7Q9Y5F8 929 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 FKBP7Q9Y680 259 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 PROB1E7EW31 1015 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 SLC30A4O14863 429 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 SLC16A7O60669 478 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 WDPCPO95876 746 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 ZNF17P17021 662 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 FKBP2P26885 142 aaKnown RBP12.34□□□□□ -0.43
PTPRF-202ENST00000372405 SRD5A2P31213 254 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 FGF9P31371 208 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-202ENST00000372405 GPR50Q13585 617 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 ZNF239Q16600 458 aaKnown RBP12.34□□□□□ -0.43
PTPRF-202ENST00000372405 TBC1D25Q3MII6 688 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 IGF2-ASQ6U949 168 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 TMEM91Q6ZNR0 172 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 LINC00696Q6ZRV3 163 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 TMPPEQ6ZT21 453 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 CDC20BQ86Y33 519 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 SYS1Q8N2H4 156 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 OR6Q1Q8NGQ2 317 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 THAP4Q8WY91 577 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 RNF166Q96A37 237 aaPredicted RBP12.34□□□□□ -0.43
PTPRF-202ENST00000372405 KCNK17Q96T54 332 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 HDHD5Q9BXW7 423 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 BARHL1Q9BZE3 327 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 PLA2G3Q9NZ20 509 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 TEKT2Q9UIF3 430 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 ST6GALNAC2Q9UJ37 374 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 TRAPPC4Q9Y296 219 aa12.34□□□□□ -0.43
PTPRF-202ENST00000372405 IGKV1D-43A0A0B4J1Z2 117 aa12.33□□□□□ -0.44
PTPRF-202ENST00000372405 TRDV1A0A1B0GX56 115 aa12.33□□□□□ -0.44
PTPRF-202ENST00000372405 NPIPA5E9PKD4 350 aa12.33□□□□□ -0.44
PTPRF-202ENST00000372405 PLPP2O43688 288 aa12.33□□□□□ -0.44
PTPRF-202ENST00000372405 LIPCP11150 499 aa12.33□□□□□ -0.44
PTPRF-202ENST00000372405 WT1P19544 449 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-202ENST00000372405 ACTA2P62736 377 aa12.33□□□□□ -0.44
PTPRF-202ENST00000372405 ACTG2P63267 376 aa12.33□□□□□ -0.44
PTPRF-202ENST00000372405 H3F3AP84243 136 aa12.33□□□□□ -0.44
PTPRF-202ENST00000372405 FMODQ06828 376 aa12.33□□□□□ -0.44
PTPRF-202ENST00000372405 ZNF404Q494X3 552 aa12.33□□□□□ -0.44
PTPRF-202ENST00000372405 DMKNQ6E0U4 476 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-202ENST00000372405 YRDCQ86U90 279 aaKnown RBP12.33□□□□□ -0.44
PTPRF-202ENST00000372405 MCFD2Q8NI22 146 aa12.33□□□□□ -0.44
PTPRF-202ENST00000372405 KIAA1143Q96AT1 154 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-202ENST00000372405 PGLYRP3Q96LB9 341 aa12.33□□□□□ -0.44
PTPRF-202ENST00000372405 FER1L6-AS2Q96M78 137 aa12.33□□□□□ -0.44
PTPRF-202ENST00000372405 EMC6Q9BV81 110 aa12.33□□□□□ -0.44
PTPRF-202ENST00000372405 ACOXLQ9NUZ1 547 aa12.33□□□□□ -0.44
PTPRF-202ENST00000372405 MRPL22Q9NWU5 206 aaKnown RBP12.33□□□□□ -0.44
PTPRF-202ENST00000372405 NPIPA1Q9UND3 350 aa12.33□□□□□ -0.44
PTPRF-202ENST00000372405 CACNA1CQ13936 2221 aa12.33□□□□□ -0.44
PTPRF-202ENST00000372405 AKAP13Q12802 2813 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 CFAP47Q6ZTR5 3102 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 H0YC42 278 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 SULT2B1O00204 365 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 PSMD9O00233 223 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 GABRPO00591 440 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 TRAF3IP2O43734 574 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-202ENST00000372405 PMS2P2O95744 297 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 CNR1P21554 472 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 TGM4P49221 684 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 DAP3P51398 398 aaKnown RBP12.32□□□□□ -0.44
PTPRF-202ENST00000372405 DYNC1I2Q13409 638 aaKnown RBP12.32□□□□□ -0.44
PTPRF-202ENST00000372405 TOMM20Q15388 145 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 ARL9Q6T311 187 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 PLEKHG7Q6ZR37 379 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 CLEC1AQ8NC01 280 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 FAM83FQ8NEG4 500 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-202ENST00000372405 SNX33Q8WV41 574 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 UTP23Q9BRU9 249 aaKnown RBP12.32□□□□□ -0.44
PTPRF-202ENST00000372405 AKIP1Q9NQ31 210 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 KLHL13Q9P2N7 655 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 ING1Q9UK53 422 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-202ENST00000372405 A0A0J9YW62 118 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 SHISA3A0PJX4 238 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 A6NIZ1 184 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 ARGFXA6NJG6 315 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 CD8B2A6NJW9 211 aa12.32□□□□□ -0.44
PTPRF-202ENST00000372405 AQP7P3A6NL99 342 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms