RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 GPR35Q9HC97 309 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 TMEM5Q9Y2B1 443 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 PDZD2O15018 2839 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 ALPK2Q86TB3 2170 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 A0A1W2PRG6 482 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 SEC14L2O76054 403 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 BCL10O95999 233 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 SLC9A3P48764 834 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 IST1P53990 364 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 TOP3AQ13472 1001 aaPredicted RBP13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 ATP6AP1Q15904 470 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 CEACAM16Q2WEN9 425 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 HIKESHIQ53FT3 197 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 TIMM23BQ5SRD1 257 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 ABHD12BQ7Z5M8 362 aaPredicted RBP13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 WDR31Q8NA23 367 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 OR4C15Q8NGM1 316 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 OR1K1Q8NGR3 316 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 HSD17B8Q92506 261 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 NRGNQ92686 78 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 CENPNQ96H22 339 aaPredicted RBP13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 LURAP1Q96LR2 239 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 ZNF184Q99676 751 aaPredicted RBP13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 POLDIP3Q9BY77 421 aaKnown RBP13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 CLEC4MQ9H2X3 399 aaPredicted RBP13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 NELFAQ9H3P2 528 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 YY1AP1Q9H869 796 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 NPAP1Q9NZP6 1156 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 OAZ3Q9UMX2 235 aa13.23□□□□□ -0.29
SMPDL3A-201ENST00000368440 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 MCIDASD6RGH6 385 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 RPL36A-HNRNPH2H7BZ11 118 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 TNFRSF11BO00300 401 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 OR10H3O60404 316 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 PGA4P0DJD7 388 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 PGA3P0DJD8 388 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 ZNF23P17027 643 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 CSNK1A1P48729 337 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 FXYD6P3P58550 94 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 PPA1Q15181 289 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 ZBED5Q49AG3 693 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 ARMC4Q5T2S8 1044 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 CDC20BQ86Y33 519 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 C1orf162Q8NEQ5 155 aaPredicted RBP13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 OR9Q2Q8NGE9 314 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 OR6N1Q8NGY5 312 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 TMEM54Q969K7 222 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 SLC25A44Q96H78 314 aaPredicted RBP13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 LRR1Q96L50 414 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 ADAD1Q96M93 576 aaKnown RBP13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 SLC17A5Q9NRA2 495 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 SIGLEC7Q9Y286 467 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 SLC25A15Q9Y619 301 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 U3KQV3 271 aa13.22□□□□□ -0.29
SMPDL3A-201ENST00000368440 SOCS2O14508 198 aa13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 DEAF1O75398 565 aaPredicted RBP13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 HMGA2P52926 109 aa13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 CTXN1P60606 82 aa13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 ARF1P84077 181 aaKnown RBP13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 OR2T5Q6IEZ7 315 aa13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 OR7E24Q6IFN5 339 aa13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 THSD4Q6ZMP0 1018 aa13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 ZBTB49Q6ZSB9 765 aa13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 OR2T29Q8NH02 315 aa13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 POP5Q969H6 163 aaKnown RBP13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 ZNF566Q969W8 418 aa13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 PLPPR2Q96GM1 343 aa13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 TSPAN32Q96QS1 320 aa13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 SLC29A1Q99808 456 aa13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 ULBP2Q9BZM5 246 aa13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 TXNIPQ9H3M7 391 aa13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 IL20RAQ9UHF4 553 aa13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 TMCC3Q9ULS5 477 aa13.21□□□□□ -0.29
SMPDL3A-201ENST00000368440 A0A096LPE4 126 aa13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 A0A1W2PPZ6 126 aa13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 UNC119BA6NIH7 251 aa13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 PTP4A3O75365 173 aa13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 DAP3P51398 398 aaKnown RBP13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 TGFBR3Q03167 851 aa13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 TBRG1Q3YBR2 411 aa13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 ANKDD1AQ495B1 522 aa13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 PGBD2Q6P3X8 592 aa13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 CBR4Q8N4T8 237 aa13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 SYT14Q8NB59 555 aa13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 NOXO1Q8NFA2 376 aa13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 HDAC2Q92769 488 aaKnown RBP13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 BCL2L2Q92843 193 aaPredicted RBP13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 USB1Q9BQ65 265 aaKnown RBP13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 BDH2Q9BUT1 245 aa13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 KATNB1Q9BVA0 655 aa13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 MRPL13Q9BYD1 178 aaKnown RBP13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 LIME1Q9H400 295 aa13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 GLTPQ9NZD2 209 aa13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 ZNF346Q9UL40 294 aaKnown RBP13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 ADAM18Q9Y3Q7 739 aa13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 SAMHD1Q9Y3Z3 626 aaKnown RBP13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 MAGED1Q9Y5V3 778 aaPredicted RBP13.21□□□□□ -0.3
SMPDL3A-201ENST00000368440 NPIPB13A6NJU9 1138 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 NPIPB4C9JG80 1138 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 TRMUO75648 421 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms